PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03533.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 571aa    MW: 63584.6 Da    PI: 4.8046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03533.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.62e-1302025712374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     ++lL++cA a+s+ ++ +aqa++++l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a
  Zmw_sc03533.1.g00080.1.am.mkhc 202 KQLLFDCAMALSEYNTDEAQAIITELRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSA 277
                                     589*****************************************************************9...89999** PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157
                                     +++++e++P++++++++aN aIlea +geervHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      
  Zmw_sc03533.1.g00080.1.am.mkhc 278 MQILFEICPCFRLGFMAANYAILEACKGEERVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrPIGG 356
                                     ***********************************************************************99878899 PP

                            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                     l+ +g+r++k+Ae +gv+fef++ v  ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vksl+P
  Zmw_sc03533.1.g00080.1.am.mkhc 357 LRVIGQRIEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKSLQP 434
                                     ***********************.799**************************************************** PP

                            GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                                     k+v++veq+a++n+++F +rf e  +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kW
  Zmw_sc03533.1.g00080.1.am.mkhc 435 KLVTLVEQDANTNTAPFPTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKW 513
                                     ******************************************************************************* PP

                            GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     r+r+++aGF+p p+++++ + +++ll+ + ++ y+ +e++g l +gW +++L++ SaW+
  Zmw_sc03533.1.g00080.1.am.mkhc 514 RARMTMAGFRPCPFNSNVISGIRSLLKSYCDR-YKFQEDHGGLHFGWGEKSLIVSSAWQ 571
                                     ******************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.178175552IPR005202Transcription factor GRAS
PfamPF035146.8E-128202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSFVRRVDPS TAYSDNLYVH KFAAPSSNFA SRRFGSDTQL VRYGPEPYNA EYGHMSFIGP  60
ASAEFQNSLC SQQVSLAQYH LTADGQSTTV ADAQCSSCSD AAKDSPVLSN VSQQNTQSVS  120
DSQSSGIEVE FDENEMRLKL QALEHALLDD GDDFFFEISQ TDRVNDEWAD PMKTVLTPNS  180
PKDSESSVSC AVSNNGATRT PKQLLFDCAM ALSEYNTDEA QAIITELRQM VSIQGDPSQR  240
IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYAIL  300
EACKGEERVH IIDFDINQGS QYITLIQFLK NNANKPRHLR ITGVDDPETV QRPIGGLRVI  360
GQRIEKLAED CGVSFEFRAV GANIGDVTPA MLDCRPGEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK SLQPKLVTLV EQDANTNTAP FPTRFREVYD YYSALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMTMA GFRPCPFNSN VISGIRSLLK  540
SYCDRYKFQE DHGGLHFGWG EKSLIVSSAW Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6320857026378Protein SCARECROW
5b3h_A4e-6320857025377Protein SCARECROW
5b3h_D4e-6320857025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA5HJS40.0A5HJS4_9POAL; Scarecrow
STRINGPavir.J20385.1.p0.0(Panicum virgatum)
STRINGSi000832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]