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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03522.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 108aa MW: 12084.9 Da PI: 7.8421 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 43.5 | 5.3e-14 | 33 | 58 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yG+ C+FaHg Zmw_sc03522.1.g00090.1.sm.mk 33 FKTELCNKWEETGGCPYGGHCQFAHG 58 79***********************9 PP | |||||||
2 | zf-CCCH | 17.5 | 7.2e-06 | 71 | 95 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykt Cr +++ C+yG rC+F H Zmw_sc03522.1.g00090.1.sm.mk 71 YKTQVCRMVLAGEPCPYGHRCHFRH 95 99*********66**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-18 | 27 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-11 | 29 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-8 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.901 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-11 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-11 | 66 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-8 | 67 | 96 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MYVDAAGGMK GEEAKEQQGA GGVELEVYNQ GMFKTELCNK WEETGGCPYG GHCQFAHGVA 60 ELRPVIRHPR YKTQVCRMVL AGEPCPYGHR CHFRHTLTPA ERLLLPRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-20 | 33 | 96 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969302.1 | 5e-62 | zinc finger CCCH domain-containing protein 9 isoform X1 | ||||
Refseq | XP_004969303.1 | 5e-62 | zinc finger CCCH domain-containing protein 9 isoform X2 | ||||
Swissprot | A2ZVY5 | 2e-57 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | K3XJH7 | 1e-60 | K3XJH7_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XJJ0 | 1e-60 | K3XJJ0_SETIT; Uncharacterized protein | ||||
STRING | Si002050m | 2e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |