PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03489.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 1393aa MW: 151098 Da PI: 9.1517 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96.4 | 2.5e-30 | 436 | 520 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++ Zmw_sc03489.1.g00010.1.am.mk 436 RWPREETLALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRF 514 8*********************************************************************866665..*** PP trihelix 82 fdqlea 87 f++lea Zmw_sc03489.1.g00010.1.am.mk 515 FSELEA 520 ***985 PP | |||||||
2 | trihelix | 108.8 | 3.6e-34 | 815 | 900 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r +m+ r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpy Zmw_sc03489.1.g00010.1.am.mk 815 RWPKAEVHALIQLRMDMDMRYQETGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPY 894 8*********************************************************************8.99******* PP trihelix 82 fdqlea 87 f+qlea Zmw_sc03489.1.g00010.1.am.mk 895 FHQLEA 900 ****85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.3E-4 | 433 | 495 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.62E-30 | 435 | 500 | No hit | No description |
Pfam | PF13837 | 3.4E-21 | 435 | 521 | No hit | No description |
PROSITE profile | PS50090 | 7.039 | 435 | 493 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0038 | 812 | 874 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.5E-23 | 814 | 901 | No hit | No description |
PROSITE profile | PS50090 | 7.189 | 814 | 872 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.72E-31 | 814 | 879 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 1393 aa Download sequence Send to blast |
MEKEILFLQY LQDSKAADAV TTGEIDRWID GQQRQRHAGR GGTAGAPHAM HAARDCVSRL 60 QRGRRRCQRS PVVRARAPHL GAAQGYGSVS RRVQSIHPKD PSIHPQPPRL INFPYLSTTS 120 PGYKTGAASA VTDSSGVDRR VALSLTLSLG QAPSHHHQVT SWARGVFACF FLPSSLALDP 180 FQLSTLPPIF FTISLSLSLS LSLPSHPIPS PPCPPAGRSL PFPYFFHSSP FSLSPRPHHT 240 HSVCPWEGEE EGAGHRAARL ELPLLSYNSV LRLLLAAFLP SLYSSSYKYA GTQGATRPAI 300 QGLAFGCGCY PQAASSSKNR RVAAAGKEKL KFNREEEELV AAPMQHQPQH QGSESPYGVA 360 PPDMGPFSPP AASSAMPLSS RPPSSSQEQQ QLTLSYEELT AVSGAGAGAG ASFPDDEMLG 420 GGSGGGGGSG TPGGNRWPRE ETLALIRIRS EMDATFRDAT LKGPLWEDVS RKLADLGYKR 480 SAKKCKEKFE NVHKYYKRTK EGRAGRQDGK SYRFFSELEA LHAAAPQQPA SSAPQMHAFA 540 APVSAPPPMN PLPPPAAGGP MQPAPISSAA PAPFELPPTQ PLNLQGLSFS SMSDSESDGE 600 SDDDDMTAET GGGQEQLGKR KRGGGGGKKM MSFFEGLMQQ VVERQEEMQR RFLETMEKRE 660 AERTAREEAW RRQEVARLNR EQDQLAQERA AAASRDATII AFLQRIGGHS VQPPAAVIVP 720 MSAHMTVQTP PPLPKQPPRQ QPTQATPPPK PISASPLQQQ PPQQQYKETS PQNVSTPRGA 780 PPTPGSAASL ELVPTSEQHV DLALGGEGGA ALSSRWPKAE VHALIQLRMD MDMRYQETGP 840 KGPLWEDISA GMRRLGYNRS SKRCKEKWEN INKYYKKVKE SNKKRPEDSK TCPYFHQLEA 900 IYLKKQQSGG TAASSANVVA AATTPAFSSQ LNQSRQEIEG KNINDDKRNN GGSSSGGAQV 960 PPSNGDPAPP LTAALDVDSG TKKPEDIVRE LTERPPREVM TDETDSDDMG DEYTDDGEEG 1020 EDDSKMQYRI QFQSPNSGGN NSAPAPAPST TTTPPGPASA PTTTNTFAAM VQPRTTKRPA 1080 DVADTDDGSV IKKWRRGSSS STTGEKRTDR STGEQGKMGS LGVSRDWIGS EGIISARKVT 1140 LPVAHLARLT PGQLTPHMTM RDLLLRDRMI RPSLSNHERS LARCLGCLQS SSVMVSAPAP 1200 TIIPAGGVVN LTTSSGATNA IRGTWPPYVM ASSGRRYVVT GRWSVAHGEL VNSDDEVLRL 1260 PGTYQQGATP RRHAGKAEFR PQLAASRRDL ILLRVPFGGS EDEDEYFIYR AGGEKGSSLR 1320 LLPRPARTTT FCDEDVGRLR RGEEHYTFRD EDVGLLRRSE EHYTVAALLP SGKSNVYQLH 1380 RFDSVTEKWS TDK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 478 | 486 | KRSAKKCKE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344790.1 | 0.0 | uncharacterized LOC100279868 isoform 2 | ||||
TrEMBL | A0A1D6E4F1 | 0.0 | A0A1D6E4F1_MAIZE; GT-2-like 1 | ||||
STRING | GRMZM2G016649_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |