PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03452.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 804aa    MW: 86838.2 Da    PI: 9.5799
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03452.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33430486259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers+ d++++ei+Y+g+Hnh 
  Zmw_sc03452.1.g00100.1.am.mk 430 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSQ-DGQITEIVYKGTHNHA 486
                                   8****************************************.***************7 PP
2WRKY105.23.5e-33583641159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct+++Cpv+k+ver+++d ++v++tYeg+Hnh+
  Zmw_sc03452.1.g00100.1.am.mk 583 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPSCPVRKHVERASHDLRAVITTYEGKHNHD 641
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-29421488IPR003657WRKY domain
PROSITE profilePS5081123.755424488IPR003657WRKY domain
SuperFamilySSF1182902.62E-25424488IPR003657WRKY domain
SMARTSM007742.4E-36429487IPR003657WRKY domain
PfamPF031061.6E-25430485IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-37568643IPR003657WRKY domain
SuperFamilySSF1182904.71E-29575643IPR003657WRKY domain
PROSITE profilePS5081137.688578643IPR003657WRKY domain
SMARTSM007743.5E-38583642IPR003657WRKY domain
PfamPF031064.7E-25584641IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MSKNNAPGDA ATHALASAYA HDRTESVALT KHRIETNDPR PPTLTITENL TRLRTRMPRR  60
HRAAPRGIAS PLLVVGIGFS PSLRALASIE RRLFNATSFD RSMSSAQLGP NNPKELGFPP  120
PPSRLQSPPK SHHRASQPGQ PRHRLETARR GSIGSCDEFN FPLFRPMTTS SSGSIKVPAN  180
SRPGAFSFAS TSFADMMGAG PAAAGGASRY KAMTPPSLPL SPPLVSPSSF NILGGLNPAD  240
FLDSPVLLTS SFDTTPPLPC HFGARGRGAL TFSLWTYEVQ DVEQSANAFC MFQIFPSPTV  300
GAFASQQYSW MPAQGEEQGS NNKEEQRQSY PDFSFQTPAP TSEEAVRTTT TFQTPIPSAS  360
LGEETYTSQQ QQPWGYPQQS GMDAGATQAA FGSASTFQAT SSDATTMALH VQGSGAGGYG  420
QTQSQRRSSD DGYNWRKYGQ KQVKGSENPR SYYKCTFPNC PTKKKVERSQ DGQITEIVYK  480
GTHNHAKPQN TRRNSSSAAL LLQSGDASEH SFGGTPVGTP ENSASFGDDD TAGNAGGDEL  540
DEDEPDSKRW RKESEAEGLS MAGNRTVREP RVVVQTMSDI DILDDGYRWR KYGQKVVKGN  600
PNPRSYYKCT TPSCPVRKHV ERASHDLRAV ITTYEGKHNH DVPAARGSAA LYRPAPPPPD  660
NHYLAAAGVR PPSMAYQNSG AGQQYAHGFS GQSSFGLQSA TGGSFAFSGF DDLTGSVRLV  720
PRPWKQEHAL ELKLVVVSKT RRADGGEIAG RESAPDDVDK VSLSPAGIGR WSVRSRFCVK  780
RKHGGFCDGA QATRSPISCT SRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36421644878Probable WRKY transcription factor 4
2lex_A7e-36421644878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1E5WCJ00.0A0A1E5WCJ0_9POAL; Putative WRKY transcription factor 33
STRINGSi000906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]