PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03449.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 465aa MW: 50438.5 Da PI: 8.3815

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03449.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	251.8	2.6e-77	61	451	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaal 81 +++++ c+ a++ g+ a+a+L+ +s asp gd ++R+a+ f+eA a+r +r ++l a++ + + + aa+ Zmw_sc03449.1.g00010.1.am.mk 61 KHVIMYCVAALDMGNVMTASAALQSISSVASPLGDHLKRVAFTFAEAFARRAMRLLPGLTWAMQLQVPPLPMtPEAINAAR 141 7899*****************************************************9999776665444155555677 PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetg 162 + f ++P+++++ + N+aIl a++ e++vH++D++ ++ QW+ L++ +a+R+++ppslR+ +v++ + + l++t+ Zmw_sc03449.1.g00010.1.am.mk 142 RSFAALCPLVRVAATAVNHAILGAMAAERAVHVVDLGGANPNQWLELIRLFAARSRSPPSLRLSVVNE----EDDFLSSTA 218 77**************************************************************....99*** PP GRAS 163 erLakfAeelgvpfefnvl..vakrledleleeLrvkp.gEalaVnlvlqlhrll...........desvsleserdevLk 229 L++ A +lgv+f fn++ ++++ ++++Lr+ + +Eal++ + lqlhrl +e+ ++ + d++L+ Zmw_sc03449.1.g00010.1.am.mk 219 GLLTQEAVRLGVNFLFNPVrsNIDHFTPTDVSALRIVEgREALVITSTLQLHRLIadevtinlpgvAENNMIT-KADALLR 298 **************7444445666689999999999***********666666666644444444.59* PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerre 307 ++++ +Pk+vv++eqea hn+e++ r+ +a++yy+alf le++++ + +r+ vEr+ll++e++++va g rre Zmw_sc03449.1.g00010.1.am.mk 299 VLRDQKPKLVVLTEQEAHHNDETLKCRVKNAFDYYAALFHDLETGAGGLAsgvADRVAVERVLLRNEVMDIVAGDGVLRRE 379 **************************************99855444455************************ PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.....yrve.eesgslvlgWkdrpLvsvSaW 373 rhe+ +W r++ aGF+p+p+++ + k+ + ++ g yr + + g+++l+ ++ p++svS+W Zmw_sc03449.1.g00010.1.am.mk 380 RHEKITRWLTRMTVAGFEPIPMTYGVIKETAIAAHLLSGSGsnmriYRAQkVNTGCIFLYARKIPIFSVSVW 451 *******************99988866555555554422233666634588999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.266	34	426	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.1E-75	61	451	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MNPEGSNNNK GKAVVVKEEP SSLPMLVDAA SPAVPPPLPA APMANIPGPH QYGENRSLFI 60 KHVIMYCVAA LDMGNVMTAS AALQSISSVA SPLGDHLKRV AFTFAEAFAR RAMRLLPGLT 120 WAMQLQVPPL PMTPEAINAA RRSFAALCPL VRVAATAVNH AILGAMAAER AVHVVDLGGA 180 NPNQWLELIR LFAARSRSPP SLRLSVVNEE DDFLSSTAGL LTQEAVRLGV NFLFNPVRSN 240 IDHFTPTDVS ALRIVEGREA LVITSTLQLH RLIADEVTIN LPGVAENNMI TKADALLRVL 300 RDQKPKLVVL TEQEAHHNDE TLKCRVKNAF DYYAALFHDL ETGAGGLASG VADRVAVERV 360 LLRNEVMDIV AGDGVLRRER HEKITRWLTR MTVAGFEPIP MTYGVIKETA IAAHLLSGSG 420 SNMRIYRAQK VNTGCIFLYA RKIPIFSVSV WCPVMSGTEC ALTGI

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MNPEGSNNNK GKAVVVKEEP SSLPMLVDAA SPAVPPPLPA APMANIPGPH QYGENRSLFI  60
KHVIMYCVAA LDMGNVMTAS AALQSISSVA SPLGDHLKRV AFTFAEAFAR RAMRLLPGLT  120
WAMQLQVPPL PMTPEAINAA RRSFAALCPL VRVAATAVNH AILGAMAAER AVHVVDLGGA  180
NPNQWLELIR LFAARSRSPP SLRLSVVNEE DDFLSSTAGL LTQEAVRLGV NFLFNPVRSN  240
IDHFTPTDVS ALRIVEGREA LVITSTLQLH RLIADEVTIN LPGVAENNMI TKADALLRVL  300
RDQKPKLVVL TEQEAHHNDE TLKCRVKNAF DYYAALFHDL ETGAGGLASG VADRVAVERV  360
LLRNEVMDIV AGDGVLRRER HEKITRWLTR MTVAGFEPIP MTYGVIKETA IAAHLLSGSG  420
SNMRIYRAQK VNTGCIFLYA RKIPIFSVSV WCPVMSGTEC ALTGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-28	60	451	4	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303827.1	1e-123	scarecrow-like protein 3
TrEMBL	K3ZDF1	1e-136	K3ZDF1_SETIT; Uncharacterized protein
STRING	Si024587m	1e-137	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13716	13	30