PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03422.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 472aa    MW: 50377.6 Da    PI: 6.3242
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03422.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.4e-12133189155
                             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Zmw_sc03422.1.g00090.1.sm.mkhc 133 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 189
                                     57*******************5444.2455536655.779999**************98 PP
2AP248.22.7e-15232283155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Zmw_sc03422.1.g00090.1.sm.mkhc 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 283
                                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-15133198IPR016177DNA-binding domain
PfamPF008473.3E-9133189IPR001471AP2/ERF domain
CDDcd000184.25E-18133199No hitNo description
Gene3DG3DSA:3.30.730.102.1E-12134198IPR001471AP2/ERF domain
SMARTSM003801.6E-22134203IPR001471AP2/ERF domain
PROSITE profilePS5103217.57134197IPR001471AP2/ERF domain
PRINTSPR003672.4E-6135146IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-18232293IPR016177DNA-binding domain
CDDcd000184.69E-24232293No hitNo description
PfamPF008475.9E-10232283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18233291IPR001471AP2/ERF domain
SMARTSM003802.1E-33233297IPR001471AP2/ERF domain
PROSITE profilePS5103219.348233291IPR001471AP2/ERF domain
PRINTSPR003672.4E-6273293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDTTAHSYPW LNFSLAHPCD LEDQERGAAA ELAAIAGAAP PPKLEDFLGG GNNGRSGGCM  60
VPGADTAAAE MYDSELKFIA AGFLSGAAGA TAPSQSPVSS LEQPDAKLAL PAASAVPAPE  120
QRKAVDSFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEEKAARAY  180
DLAALKYWGP STTTNFPVAE YEKELEEMKN MTRQEFVASL RRKSSGFSRG ASIYRGVTRH  240
HQHGRWQARI GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EISRYNVESI  300
ISSNLPIGSI SASGRSAKGL ESASTGSPDA MAVEAGTAPG TLAFSALPVK YDQQDYLSML  360
ALQHHQQGNL QGSLGFGLYS SGVNLDFTAN NGGAMAAHCY AAHGGAAAHE QYDQQQQDQS  420
TQQGSSGCST IPFATPIAFS GGSSYESSVT PSPFGYYPNV AAFHQTPIYG ME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822847.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-135AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2T7D0Y70.0A0A2T7D0Y7_9POAL; Uncharacterized protein
STRINGPavir.Gb00275.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]