PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03404.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 436aa MW: 47484 Da PI: 8.8322

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03404.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60	4.6e-19	122	190	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT........EEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk........vveitYegeHnhe 59 +Dgy+WrKYG K ++g++f+rsY+rC+++ gC ++k v+++++d++ v+++tY+++H+++ Zmw_sc03404.1.g00080.1.am.mk 122 EDGYEWRKYGEKRINGAQFTRSYFRCAYKddtGCLATKYVQQTQDDGNnnsvveppVFQVTYNNDHTCK 190 7*************************99999*****999875444444447899****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-20	110	190	IPR003657	WRKY domain
SuperFamily	SSF118290	1.18E-18	115	190	IPR003657	WRKY domain
SMART	SM00774	8.3E-28	121	191	IPR003657	WRKY domain
Pfam	PF03106	4.9E-22	122	190	IPR003657	WRKY domain
PROSITE profile	PS50811	15.824	122	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MPVDDCDGAV REVAQVYELI KTKLPLFLLQ RRHGQQEQPP ATTTSLLSEA LRALNIALST 60 MTKMQKQQQQ HQLEITSPAP AAAGSGNGAT TSVKRRRSSV LTEGGRKNSS SSWVNLTTVP 120 YEDGYEWRKY GEKRINGAQF TRSYFRCAYK DDTGCLATKY VQQTQDDGNN NSVVEPPVFQ 180 VTYNNDHTCK CAAATSAASS AMEEENINKI PTTGPPPPPP GGDHTDVAMD MVPKEEETVV 240 GIGYVGPTDS GIVRRRNTCS TCASGRLSPF PFFLTLLPLS GLKRNAGPPL PAPPLRSSVF 300 HSTAAFLRLP FPERIRHGNQ LLPLPAVDRS VGFRSAGAML RLLVCALFLL GGCHGRFVVE 360 KNSLNVTAPE DLKGTYECAI GNFGVPQYGG TMVGFVAYPK ANRKACKDFD DFDISYKAKP 420 GAFLARRQGN VMFEVI

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MPVDDCDGAV REVAQVYELI KTKLPLFLLQ RRHGQQEQPP ATTTSLLSEA LRALNIALST  60
MTKMQKQQQQ HQLEITSPAP AAAGSGNGAT TSVKRRRSSV LTEGGRKNSS SSWVNLTTVP  120
YEDGYEWRKY GEKRINGAQF TRSYFRCAYK DDTGCLATKY VQQTQDDGNN NSVVEPPVFQ  180
VTYNNDHTCK CAAATSAASS AMEEENINKI PTTGPPPPPP GGDHTDVAMD MVPKEEETVV  240
GIGYVGPTDS GIVRRRNTCS TCASGRLSPF PFFLTLLPLS GLKRNAGPPL PAPPLRSSVF  300
HSTAAFLRLP FPERIRHGNQ LLPLPAVDRS VGFRSAGAML RLLVCALFLL GGCHGRFVVE  360
KNSLNVTAPE DLKGTYECAI GNFGVPQYGG TMVGFVAYPK ANRKACKDFD DFDISYKAKP  420
GAFLARRQGN VMFEVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4tjv_A	1e-29	356	435	3	85	Vacuolar-sorting receptor 1
4tjx_A	1e-29	356	435	3	85	Vacuolar-sorting receptor 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5045	26	63