PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03382.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 563aa    MW: 60053.3 Da    PI: 8.0825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03382.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.11.3e-26323381259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dg++WrKYGqK+ kg+++pr+YY+Ct++ +Cpv+k+v+r+ ed +v+++tY++ H h+
  Zmw_sc03382.1.g00010.1.am.mk 323 SDGCQWRKYGQKMPKGNPCPRAYYQCTMSaDCPVRKQVQRCVEDRTVLITTYQNYHSHP 381
                                   7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.924317383IPR003657WRKY domain
SuperFamilySSF1182902.48E-24319383IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-27320383IPR003657WRKY domain
SMARTSM007746.4E-29322382IPR003657WRKY domain
PfamPF031062.9E-22324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
ELKVERSCHW PSLGTSLFST SLGTPSSRSI AVDGLARHRS RAQQERWRRR AGAVAVAGRV  60
PTGGAGLRRR RRRWSGSGGA AGDRLREREK KSAGIDHAPA DADAALDDLR IVKDDLTLNV  120
GRKRKSASEK SSIDDHDGDY HDNSNEGDGR KGNEVDDEVC RTARTIHVQL ELTKAELRCV  180
KEENERLRNL ISHANAAYRS LQAHIVRMME QQQLNVDPEK KEQDASLLSL GTAPDSGVDS  240
APSPGKNNLG LGWIAPEMMP LPTFDHLRHH LREVGSSTKE APLPQHFPQG WLPSPDKVPE  300
YLPAKAPEPV PAAGPAGTMR KISDGCQWRK YGQKMPKGNP CPRAYYQCTM SADCPVRKQV  360
QRCVEDRTVL ITTYQNYHSH PLPPAARAMA SQTAEAASML LSGSMPTADG SLMAGSNFLA  420
RCAMLPCSSG VASISASEPF PSLTLDLTHT STQPPRPVPD QLQAALAEAA RPVQLPQPHD  480
KLSAVLAAAG VKATDGGVLA DTFSAAAAII SDPNFTAALA DAIKSYIGSG SGSGGSSGTV  540
QPLESGGDDN SCSKEDKAGG NSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-173223851476WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772RRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.11e-120probable WRKY transcription factor 31
TrEMBLA0A0E0L5U91e-126A0A0E0L5U9_ORYPU; Uncharacterized protein
STRINGOPUNC05G23690.11e-127(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734