PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03351.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 643aa MW: 72170.6 Da PI: 7.9508

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03351.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.1	8.3e-22	145	241	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++++ +kk++W+ vs +m ergf +sp+qC+e++++lnkryk+++e+ + Zmw_sc03351.1.g00010.1.am.mk 145 KWTSDMVKLLVSAVSYVDEEVEADHgsgsgrrkhavlKKKGKWKPVSMAMTERGFAVSPQQCEERFNDLNKRYKRLTEILG 225 7*******************876667788899999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ ++e +++ +++++ Zmw_sc03351.1.g00010.1.am.mk 226 RGrACEIVEKPALLEK 241 9956888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-19	143	268	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
FHRDWLPALL SPLEFATFPA IQWPFPRYDS ASFSVRLPPR FRLLWPGVGV FSSEMEGNVP 60 PRALIPGSPF DLEPAMQQPR RQQFHFAQPQ VHQGAFAVPA PNPAQELRSV VKTSLSDEED 120 AYDGLHYNGK TAAAAAAASQ WHRVKWTSDM VKLLVSAVSY VDEEVEADHG SGSGRRKHAV 180 LKKKGKWKPV SMAMTERGFA VSPQQCEERF NDLNKRYKRL TEILGRGRAC EIVEKPALLE 240 KISLSARLKE EAKKHLNSKH LHYEEMCSYH NRNCFCLLDD PTLQKSLRMA LRSGHEQGTK 300 TSFGYEDEYD QAFVSDDDDE DDEYNDEANA RDRHHRGHNT KKLKHDHEKT HCGSHLSEVA 360 AIDMNKMFFE GSGGAAAEKN LRGIHSNQIE QEHLKIKAQM LKIELRHLKW LRFSKEKDRE 420 LEKMRLENEK MAMENKHMEL ELKLKEIELV IVPRRSHGAR TQREIDNAMP GVQPGNSGRC 480 SAGNGISGAQ QHDTKTKLLV MPLRALRRRS SLLTGHYTTS CHTSTLIGLE AAAMGACATK 540 SGDLKVQSEP PLVVEDPPVA EGEKVKADVV PPGDVGRRRS LSELLKEEGT ANHDRETGQE 600 SGGEARVAEE EKRVNPDSIR VATVAAAATV ACRSDECRRK RGC

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

FHRDWLPALL SPLEFATFPA IQWPFPRYDS ASFSVRLPPR FRLLWPGVGV FSSEMEGNVP  60
PRALIPGSPF DLEPAMQQPR RQQFHFAQPQ VHQGAFAVPA PNPAQELRSV VKTSLSDEED  120
AYDGLHYNGK TAAAAAAASQ WHRVKWTSDM VKLLVSAVSY VDEEVEADHG SGSGRRKHAV  180
LKKKGKWKPV SMAMTERGFA VSPQQCEERF NDLNKRYKRL TEILGRGRAC EIVEKPALLE  240
KISLSARLKE EAKKHLNSKH LHYEEMCSYH NRNCFCLLDD PTLQKSLRMA LRSGHEQGTK  300
TSFGYEDEYD QAFVSDDDDE DDEYNDEANA RDRHHRGHNT KKLKHDHEKT HCGSHLSEVA  360
AIDMNKMFFE GSGGAAAEKN LRGIHSNQIE QEHLKIKAQM LKIELRHLKW LRFSKEKDRE  420
LEKMRLENEK MAMENKHMEL ELKLKEIELV IVPRRSHGAR TQREIDNAMP GVQPGNSGRC  480
SAGNGISGAQ QHDTKTKLLV MPLRALRRRS SLLTGHYTTS CHTSTLIGLE AAAMGACATK  540
SGDLKVQSEP PLVVEDPPVA EGEKVKADVV PPGDVGRRRS LSELLKEEGT ANHDRETGQE  600
SGGEARVAEE EKRVNPDSIR VATVAAAATV ACRSDECRRK RGC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952693.1	1e-177	uncharacterized protein LOC101766818
Refseq	XP_004952694.1	1e-177	uncharacterized protein LOC101766818
TrEMBL	A0A0A9DXA8	0.0	A0A0A9DXA8_ARUDO; Uncharacterized protein
STRING	Si017397m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36