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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03318.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 589aa MW: 64890.8 Da PI: 6.2146 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2e-12 | 419 | 458 | 1 | 45 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+ Zmw_sc03318.1.g00040.1.am.mkhc 419 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARY 458 78*******************......55**********7777763 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.01E-12 | 419 | 482 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-5 | 419 | 458 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-13 | 420 | 482 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.709 | 420 | 481 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-27 | 420 | 487 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-19 | 420 | 483 | No hit | No description |
CDD | cd00018 | 1.96E-11 | 516 | 561 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-6 | 516 | 560 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-13 | 517 | 565 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
GDPVRATASQ LACFMYTAAL SPWPSPAAPS MRRPPLDVHT SLALAATTEM PELEGDDEAA 60 TGCWFPERER ERGILVGPWI RNVWWGLSLD ESIELPYSVY SNAYEGLISS YASDIHVSHY 120 AFWSNSFRYL APTFTSQRAT RNAPQRIPAP SLFRIPSSPF PSATATARRR RLPELDGRQR 180 LGVRRQIDRP WRINVPQERL GTLLLLSLPP LVLLLEIDQA TCNPQESRGV LCLLCRELVG 240 SSLATTTRSS EMELDLNVAE VAPEKPASAA RSDSGTSESS VLNAEASAAP AEEGSSSTPP 300 PRAVLEFSIL RSSASAEGDS DAAGADEDDD ATPSPPRQLQ LQQPQPPQLV TRELFPAAAG 360 PPCPGPPHWA ELGFFRAEPP RTQTDIRILP HPHAPLPAPP PVQPQPAKKS RRGPRSRSSQ 420 YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARYAT ELAYDRAAIK FRGVDADINF 480 NLSDYEDDMK QMKSLSKEEF VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK 540 AYDKAAIKCN GREAVTNFEP STYDGELLAE VSAEGTVLEM TTEISDDCD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806429.1 | 1e-135 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | B8AXC3 | 1e-123 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A0N7BW92 | 1e-139 | A0A0N7BW92_DENLA; Transcription factor AP2 | ||||
STRING | Traes_1BS_E68807072.2 | 1e-132 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10083 | 29 | 35 |