PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03309.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 798aa MW: 85298.8 Da PI: 9.5979 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 619 | 670 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +++g+ Zmw_sc03309.1.g00110.1.am.mk 619 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTAVEAARAYDRAAFRMRGA 670 8********.***********8876..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 618 | 678 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-22 | 619 | 678 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.21E-29 | 619 | 678 | No hit | No description |
PROSITE profile | PS51032 | 24.223 | 619 | 677 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-39 | 619 | 683 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 619 | 669 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-13 | 620 | 631 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-13 | 659 | 679 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 798 aa Download sequence Send to blast |
MGNKVFCSCC SPSPSNSGYL AAGMDRWTGV VHVPLSRGGP LSRVAASLIL SPTKTLAVRL 60 PPSALLAFGF FPFVPRANAI LFTGDRVRGT GDPTIERLSD AVHLAGVLAG KLSGETNAWV 120 IDAARFSGSF AVYRELVPSV DAAGDPKGYE PTGFPAAAGV ASLLAHGIGE AFQLVLLRLA 180 TKLDWGLARR TESNPRNTVG FRPRARPALV WLDSRAVLTR FSTALASIFS GARGPSARRW 240 PLLGKKGVAR CGESSPATLP RALSCGNWEP RNEKNAYALR RVDQQPVRGQ SFAAAGVTVA 300 SAVLVETMPE IRVTYVLCIQ GPHAREPIDR ALPAASKRCT VSINRRLPAT SAVEKVLEDD 360 GRGVGSGGVT EKLRRCSRLL HAVFVRVEAQ PTTTAKDQMN TVTRVNEPSI SARDRSPSVA 420 RQLTAGAAVR GGAGQQQALD AGPDFVWPRV GLATFRYFAA RVNWVCIGEQ SMYWPPPRDM 480 DFSGEGDDFW LQIIREQCYA GEACLPVPET YAASSAVAPP AQQAYQHTAF TLQQQQQQQV 540 ALVDLTHGYA DAAAAAAAFQ AAEPAAPLMI RFGGEPSPRP SLTISLPPTS LAWGTDVVAP 600 LPAHSAAGAA VADVDDFRKY RGVRQRPWGK YAAEIRDPKK RGSRVWLGTY DTAVEAARAY 660 DRAAFRMRGA KAILNFPNEV GSLGADFLAT PPQHAARSPN KRKLRDDAQT DVEPAAKSVK 720 TETLTSPASS QTTSLSPATT AASTVTSLSS SEAAGAHEEW LPMTPSSWAW EQFESMFESL 780 PPLSPHPGQM GFSEVIVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-26 | 618 | 682 | 4 | 68 | ATERF1 |
3gcc_A | 5e-26 | 618 | 682 | 4 | 68 | ATERF1 |
5wx9_A | 1e-25 | 619 | 679 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |