 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc03286.1.g00050.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
| Family | WRKY | ||||||||
| Protein Properties | Length: 300aa MW: 31231.8 Da PI: 6.3566 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 53.8 | 3.8e-17 | 100 | 156 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
ldDg++WrKYGqK +++se+pr Ct+ gC+++k+v+ s+++p+ ++ Y g+ ++
Zmw_sc03286.1.g00050.1.sm.mk 100 LDDGHAWRKYGQKRIHDSENPR----CTHMpdqGCKARKQVQVSDSNPSEYVVSYFGQRTC 156
59*******************6....9998888************************9887 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 4.5E-18 | 93 | 159 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.48E-17 | 94 | 159 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 16.065 | 95 | 159 | IPR003657 | WRKY domain |
| SMART | SM00774 | 6.7E-25 | 100 | 158 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 4.7E-15 | 101 | 156 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 300 aa Download sequence Send to blast |
MASPGSSGDR SPAVPRKVVD DLLGVHKRVA MLQTMVDGSP AAARELVDGM MTRVTNALTT 60 ALNTSGVVVD GVEWSSLGSR GSPGGRRDSA GAVTVTATTL DDGHAWRKYG QKRIHDSENP 120 RCTHMPDQGC KARKQVQVSD SNPSEYVVSY FGQRTCRDPS TVPIVIDAPM NLSNFISFGG 180 STATTSAAHA VPPRRQQAVA PTTMRSRLAG YISSSLPAAA EQRCRSEEAI SLAGELGAVV 240 AGALSNAGRT TVGSAPEFDV LLDVGIDTAG SFPSSPSSLG GFMTGSFGSF GEDDFFGFDP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6ir8_A | 1e-19 | 94 | 157 | 2 | 69 | OsWRKY45 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025802431.1 | 4e-75 | uncharacterized protein LOC112881781 | ||||
| TrEMBL | A0A2S3H519 | 9e-74 | A0A2S3H519_9POAL; Uncharacterized protein | ||||
| STRING | Pavir.Ba00227.1.p | 1e-67 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP12527 | 28 | 37 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|