PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03255.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 291aa    MW: 30967.9 Da    PI: 10.4445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03255.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19123171456
                           AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   +GVr ++ +gr++AeIrd +     r +r++lg+f+t+e Aa+a++aa+++l+g+
  Zmw_sc03255.1.g00070.1.am.mk 123 RGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEAAARAYDAAARRLRGP 171
                                   9******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.354121178IPR001471AP2/ERF domain
SMARTSM003805.7E-29121184IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-20122179IPR016177DNA-binding domain
PfamPF008473.8E-13122170IPR001471AP2/ERF domain
PRINTSPR003673.4E-9122133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-28123178IPR001471AP2/ERF domain
CDDcd000182.38E-15123180No hitNo description
PRINTSPR003673.4E-9144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MASTEERKKS GRRSWLACPD QTRGMSRRLT HQDSPPRPAV TRPTVDPAST TPPCRRTRSS  60
ARLYKIRAAG PLVHRKAPNQ SSASKQPGQK HSMAPPRSST SLPFGSSSSS TGLEPKEQPL  120
RLRGVRKRPW GRYAAEIRDP VRKARVWLGT FDTPEAAARA YDAAARRLRG PGAATNYPVA  180
DAVPSEGSSS SCQDLDSRPS VAVEATAPPS LDLSLGLPAT MAAGHPCLFV DQTETTVPDV  240
PALIQFLPLK SEEEAGESVW SSSPGLGDAA PTVGVGLDLS LSWPAATAMV M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-181211781472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972568.13e-42ethylene-responsive transcription factor 11
TrEMBLK3YJQ57e-41K3YJQ5_SETIT; Uncharacterized protein
STRINGSi014474m1e-41(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025