PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03252.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 327aa MW: 35470.8 Da PI: 6.2804

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03252.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.7	1.6e-47	10	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.............vikevdiykvePwdLpkkvkaeek.ewyfFskrdkk 67 lppGfrFhP+deelv++yL++kv++++ + ++ + evd++ +ePwdLp+++k +++ ewyfFs+rd+k Zmw_sc03252.1.g00140.1.sm.mk 10 LPPGFRFHPSDEELVCYYLRPKVAATSSSSHDqliavslspatsmLLVEVDLHVCEPWDLPEAAKLGDRqEWYFFSRRDQK 90 79********************99955544566777778887569**********655555444******* PP NAM 68 yatgkrknratksgyWkatgkdkevlsk....kgel....vglkktLvfykgrapkgektdWvmheyrl 128 yatg+r+nrat +g Wk tgkdk v+++ + vg++ktLvfy grap+g+k+dWvmhe+rl Zmw_sc03252.1.g00140.1.sm.mk 91 YATGTRTNRATPHGCWKVTGKDKVVHDRdehgN--GtmmvVGTRKTLVFYLGRAPNGRKSDWVMHEFRL 157 **********************9865541..15566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-54	8	188	IPR003441	NAC domain
PROSITE profile	PS51005	53.859	10	188	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	11	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MRLRDIESSL PPGFRFHPSD EELVCYYLRP KVAATSSSSH DQLIAVSLSP ATSMLLVEVD 60 LHVCEPWDLP EAAKLGDRQE WYFFSRRDQK YATGTRTNRA TPHGCWKVTG KDKVVHDRDE 120 HGNGTMMVVG TRKTLVFYLG RAPNGRKSDW VMHEFRLGAA SCSSTSAASA MTPPQMEQDW 180 VLCRVFHKGK GEADNGGSSN VDMIASSSTG SSRLPALCSP PQPAHNLDGG RLFPTSVGSY 240 SSSPTIIIIS SGQQLVMDSD DHGVVTGQYL DAPTPAPAMI QQHAAAGDAV VAGSSAQPMD 300 TQGYGENVMR EMETMMSLQP GANNYFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-42	9	188	19	168	NAC domain-containing protein 19
3swm_B	7e-42	9	188	19	168	NAC domain-containing protein 19
3swm_C	7e-42	9	188	19	168	NAC domain-containing protein 19
3swm_D	7e-42	9	188	19	168	NAC domain-containing protein 19
3swp_A	7e-42	9	188	19	168	NAC domain-containing protein 19
3swp_B	7e-42	9	188	19	168	NAC domain-containing protein 19
3swp_C	7e-42	9	188	19	168	NAC domain-containing protein 19
3swp_D	7e-42	9	188	19	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	O65508	2e-54	NAC76_ARATH; NAC domain-containing protein 76
TrEMBL	A0A0D9VNG4	1e-66	A0A0D9VNG4_9ORYZ; Uncharacterized protein
STRING	LPERR03G00700.1	2e-67	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25527	4	5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]