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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03234.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 389aa MW: 41144.2 Da PI: 9.5828 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.2 | 2.2e-06 | 289 | 315 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + Zmw_sc03234.1.g00050.1.sm.mkhc 289 SHSLAERVRREKISQRMKLLQDLVPGC 315 8************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-7 | 283 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.84E-5 | 283 | 326 | No hit | No description |
PROSITE profile | PS50888 | 9.28 | 285 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-7 | 288 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MNCGPPDQMP PATAPSCFLN LNWDQSMAAA GNGDRLDPAL SSMVSSPASN STAAAASDGL 60 ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPRPLVGG AGAAGQPILE NFMPPMGRMD 120 QFLADPGFTE RAARLSSFDG RAGAYAGAVP GQFGLPDAGP VGALKELELG NGRDESSMSD 180 PASASADMTL KGPSDGNARK WKASGKGKGK DGPVSTSAKD LAKEESSGKR CKSGDESNGA 240 EENSSRGKAA QNSNENGGKK QGKDSTSKPT EPPKDYIHVR ARRGEATDSH SLAERVRREK 300 ISQRMKLLQD LVPGCNKFLS MKLATVNPQL DFNNLPNLLS KDAFNKTRGG AKGQTGGTNK 360 LRWEWICWKM LLGVHHQTKQ CDGIQAMLR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971039.1 | 0.0 | transcription factor bHLH77 | ||||
TrEMBL | A0A0A9QTY7 | 0.0 | A0A0A9QTY7_ARUDO; Uncharacterized protein | ||||
STRING | Si001242m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |