PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc03204.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 760aa MW: 83705.6 Da PI: 6.6404

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03204.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	356.2	5.1e-109	379	750	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL++cA+av+++d + a++lL++++++asp+gd +qRla++f+e+L+arla+++s +y++l +++ts + l+a+ Zmw_sc03204.1.g00020.1.am.mk 379 LRTLLIHCAQAVATDDRRSATELLKQIKQHASPQGDGTQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---AVALLQAY 456 6789**********************************************************999998...899* PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 +l+ + + k++++ N +I +a g++++Hi+D++i +G+QWp++l++++ R++gpp++ iTg++ p++g +e++ee Zmw_sc03204.1.g00020.1.am.mk 457 QLYMAAICFKKVAFVFSNTTIFNASLGKKKIHIVDYGIHYGFQWPCFLKQISGREGGPPEVTITGIDLPQPGfrPTERIEE 537 *******************************************************************9***** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 tg+rL+++A+e+gvpf++++++a+++e+++ e+L+++p+E+l+Vn+++q ++l+desv +es+rd vL+ +++++P+ +++ Zmw_sc03204.1.g00020.1.am.mk 538 TGRRLSNYAREFGVPFKYHAIAASKMESVRKEDLNIDPDEVLIVNCMYQFKNLMDESVVIESPRDVVLNNIRKMQPHTFIH 618 ***************************************************************************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + + + +++ F++rf eal yysalfd l+++ pr+s++r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++a Zmw_sc03204.1.g00020.1.am.mk 619 AIVNGSFSAPFFVTRFREALFYYSALFDVLDTTTPRDSDQRMLIEQNIFGRSALNVIACEGTDRVERPETYKQWQVRNQRA 699 ***************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 G+k++pl+ ++++ ++ ++ ++ + + ++ ++++l++gWk+r L+++S W Zmw_sc03204.1.g00020.1.am.mk 700 GLKQLPLKRETVEIVRGKVKDCYHKDFVIDIDHHWLLQGWKGRILFAISTW 750 *******************889*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.698	353	731	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-106	379	750	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MQWKAGEKSP GPKPPLVGNG NAVECWRKVD GVERVMAWRC FCPPNGAELS RADPLPLQPA 60 SHQRRLEIPI SAAAFPEPSS ARLHSLPTRR LQIYPLSSLS LSSSRARPRP VTHAAAMGSS 120 YDLYQSPGAD DPSLYLFLSD LVPDSPSAYL DLPPTPHHEQ QQQPVSAAAA AADGGAAAGS 180 PEDLVLPYIS RMLMEDDIED KFFYDYPDNP SLLQAQQPFL EILSNSDDTT TTTTTTTTSS 240 GGGDHGDPSP TSSSSDGASA PAPSPAPPVA PAVTLSVKEE LFDAAPGNGV GRGRKNPYDH 300 DELEVEGGRS SKQSAVQGED DATRDMLDRV MMPSHEACVL QMQQLRIAMQ EEAAKNEAGG 360 KAGNGKAKGR RGGRDVVDLR TLLIHCAQAV ATDDRRSATE LLKQIKQHAS PQGDGTQRLA 420 HCFAEGLQAR LAGTGSMVYQ SLMAKRTSAV ALLQAYQLYM AAICFKKVAF VFSNTTIFNA 480 SLGKKKIHIV DYGIHYGFQW PCFLKQISGR EGGPPEVTIT GIDLPQPGFR PTERIEETGR 540 RLSNYAREFG VPFKYHAIAA SKMESVRKED LNIDPDEVLI VNCMYQFKNL MDESVVIESP 600 RDVVLNNIRK MQPHTFIHAI VNGSFSAPFF VTRFREALFY YSALFDVLDT TTPRDSDQRM 660 LIEQNIFGRS ALNVIACEGT DRVERPETYK QWQVRNQRAG LKQLPLKRET VEIVRGKVKD 720 CYHKDFVIDI DHHWLLQGWK GRILFAISTW VANDAGCPYF

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MQWKAGEKSP GPKPPLVGNG NAVECWRKVD GVERVMAWRC FCPPNGAELS RADPLPLQPA  60
SHQRRLEIPI SAAAFPEPSS ARLHSLPTRR LQIYPLSSLS LSSSRARPRP VTHAAAMGSS  120
YDLYQSPGAD DPSLYLFLSD LVPDSPSAYL DLPPTPHHEQ QQQPVSAAAA AADGGAAAGS  180
PEDLVLPYIS RMLMEDDIED KFFYDYPDNP SLLQAQQPFL EILSNSDDTT TTTTTTTTSS  240
GGGDHGDPSP TSSSSDGASA PAPSPAPPVA PAVTLSVKEE LFDAAPGNGV GRGRKNPYDH  300
DELEVEGGRS SKQSAVQGED DATRDMLDRV MMPSHEACVL QMQQLRIAMQ EEAAKNEAGG  360
KAGNGKAKGR RGGRDVVDLR TLLIHCAQAV ATDDRRSATE LLKQIKQHAS PQGDGTQRLA  420
HCFAEGLQAR LAGTGSMVYQ SLMAKRTSAV ALLQAYQLYM AAICFKKVAF VFSNTTIFNA  480
SLGKKKIHIV DYGIHYGFQW PCFLKQISGR EGGPPEVTIT GIDLPQPGFR PTERIEETGR  540
RLSNYAREFG VPFKYHAIAA SKMESVRKED LNIDPDEVLI VNCMYQFKNL MDESVVIESP  600
RDVVLNNIRK MQPHTFIHAI VNGSFSAPFF VTRFREALFY YSALFDVLDT TTPRDSDQRM  660
LIEQNIFGRS ALNVIACEGT DRVERPETYK QWQVRNQRAG LKQLPLKRET VEIVRGKVKD  720
CYHKDFVIDI DHHWLLQGWK GRILFAISTW VANDAGCPYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-44	383	750	8	374	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664663.2	0.0	PREDICTED: scarecrow-like protein 9, partial
Refseq	XP_015620149.1	0.0	scarecrow-like protein 34
Swissprot	O80933	1e-163	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A287QL73	0.0	A0A287QL73_HORVV; Uncharacterized protein
STRING	OBART12G16530.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297