PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03203.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 346aa MW: 37925.5 Da PI: 7.1357 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 9.9e-12 | 47 | 71 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtGtC yGdrC+++H++ Zmw_sc03203.1.g00060.1.sm.mkhc 47 EADCAYYLRTGTCAYGDRCRYNHPR 71 789********************96 PP | |||||||
2 | zf-CCCH | 35.2 | 2.1e-11 | 123 | 148 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ Zmw_sc03203.1.g00060.1.sm.mkhc 123 GEKECSYYVKTGHCKFGATCKFHHPE 148 5789********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.5e-12 | 275 | 301 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCk+G++Ck++H++ Zmw_sc03203.1.g00060.1.sm.mkhc 275 PGQPECEHYMKTGTCKFGPTCKYHHPQ 301 5789*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.4E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.971 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-6 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-6 | 50 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-9 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 127 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-6 | 274 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.056 | 274 | 302 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-10 | 276 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 278 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 280 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MELQGGEESA GGGGHSGTTG LEEAFQELEV RGEEEAAEAR LPERRGEADC AYYLRTGTCA 60 YGDRCRYNHP RDRRAAASLP WGGQGWCAKH SGHSDNDRRV NGVGRTIDTM EYPERPGQLL 120 CEGEKECSYY VKTGHCKFGA TCKFHHPELG VADTSHIYPP GQPSTVSSAH PYPHFGSLQM 180 GRPPFVPGSY LPGSCPPMML SSTVMAMQGW NPYISPMNQV MPAGGQQTVQ AGHPYGLSHQ 240 SPTSSVSYGN LYAPFYPSAG PSSCNKQVHG FPERPGQPEC EHYMKTGTCK FGPTCKYHHP 300 QYFSGPNSNY MLNPLVLPHR PLLRTLSVSL LLPWLDHPLI FGHNTL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967812.1 | 1e-126 | zinc finger CCCH domain-containing protein 5 | ||||
Swissprot | Q5NAV3 | 1e-113 | C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A0A9P980 | 1e-135 | A0A0A9P980_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ea00915.1.p | 1e-131 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Publications ? help Back to Top | |||
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