PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03167.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 484aa MW: 51676.6 Da PI: 6.76

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03167.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	294.1	3.8e-90	111	475	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 + lL+ecA avs g+l+ a+ +L +ls++asp++ + +Rl+ayft+A+aarl++s+ ++++ l+p ++ + aa+ Zmw_sc03167.1.g00020.1.sm.mk 111 IALLMECAVAVSVGNLADANGMLLELSQMASPYApSCGERLVAYFTKAMAARLMSSWVGVCAPLAPPWSA------VHAAF 185 689*****************************8889*******************999887776......56789 PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160 ++f++v P+ +f++l++Nqa+lea++g++ vHi+D+d+ G lQW++Ll aLasRp+gpp lR+Tg+g s+ +++ Zmw_sc03167.1.g00020.1.sm.mk 186 RAFYNVAPFARFAYLACNQAVLEAFHGKRLVHIVDLDMVPGgaLQWLSLLPALASRPGGPPLLRVTGFGM----SASAVRD 262 99********************************988447**********************....9** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledle.leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239 tg++L+ +A++lg+pfef + vakr d++ + k+ gEa+aV++ h l+d ++ +L+lv+ l+Pkv+ Zmw_sc03167.1.g00020.1.sm.mk 263 TGNQLTGLARKLGIPFEFYA-VAKRPGDVNaAADVPSKRpGEAVAVHWLR--HALYDAAGDDGA----TLRLVRWLEPKVM 336 ****************.6777777751556655556****98..888865565555....********* PP GRAS 240 vvveqe......adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetle 313 ++veqe +++ Fl+rf++al++ysalfds+ a+ p+++ r+ vE +lgrei+nv+a g +r r+ +++ Zmw_sc03167.1.g00020.1.sm.mk 337 TLVEQErgalgdGGAGHGHFLDRFVSALHHYSALFDSMGASRPADEdASRHLVEDGVLGREIMNVLAVGGPSRSGRE-KFG 416 **655433334556****************88888877699*******************88775.5 PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 W+ l++ GF + + +a+ ++ + gy+v ++++ v lgWk+ pL++vS W+ Zmw_sc03167.1.g00020.1.sm.mk 417 CWQTELGRHGFLRAGGGARAQLV----AGACPaGLGYTVADDRDGTVrLGWKGTPLYTVSTWT 475 *********999888776555....555666677977555555*************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.171	84	457	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-87	111	475	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MATGRRSDMQ DYLGLMQFHD QYLYGGSAGA ANNLPLQHHF LHHPQQGFVH GRERFTGKDH 60 VLEFAEPAAD ASEQDLAAAC TEVSGGGDDA AEERNGAAAR CEEEAHGVRM IALLMECAVA 120 VSVGNLADAN GMLLELSQMA SPYAPSCGER LVAYFTKAMA ARLMSSWVGV CAPLAPPWSA 180 VHAAFRAFYN VAPFARFAYL ACNQAVLEAF HGKRLVHIVD LDMVPGGALQ WLSLLPALAS 240 RPGGPPLLRV TGFGMSASAV RDTGNQLTGL ARKLGIPFEF YAVAKRPGDV NAAADVPSKR 300 PGEAVAVHWL RHALYDAAGD DGATLRLVRW LEPKVMTLVE QERGALGDGG AGHGHFLDRF 360 VSALHHYSAL FDSMGASRPA DEDASRHLVE DGVLGREIMN VLAVGGPSRS GREKFGCWQT 420 ELGRHGFLRA GGGARAQLVA GACPAGLGYT VADDRDGTVR LGWKGTPLYT VSTWTWCPAS 480 HTPR

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MATGRRSDMQ DYLGLMQFHD QYLYGGSAGA ANNLPLQHHF LHHPQQGFVH GRERFTGKDH  60
VLEFAEPAAD ASEQDLAAAC TEVSGGGDDA AEERNGAAAR CEEEAHGVRM IALLMECAVA  120
VSVGNLADAN GMLLELSQMA SPYAPSCGER LVAYFTKAMA ARLMSSWVGV CAPLAPPWSA  180
VHAAFRAFYN VAPFARFAYL ACNQAVLEAF HGKRLVHIVD LDMVPGGALQ WLSLLPALAS  240
RPGGPPLLRV TGFGMSASAV RDTGNQLTGL ARKLGIPFEF YAVAKRPGDV NAAADVPSKR  300
PGEAVAVHWL RHALYDAAGD DGATLRLVRW LEPKVMTLVE QERGALGDGG AGHGHFLDRF  360
VSALHHYSAL FDSMGASRPA DEDASRHLVE DGVLGREIMN VLAVGGPSRS GREKFGCWQT  420
ELGRHGFLRA GGGARAQLVA GACPAGLGYT VADDRDGTVR LGWKGTPLYT VSTWTWCPAS  480
HTPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-102	94	475	3	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963689.1	0.0	protein SCARECROW
Refseq	XP_025806715.1	0.0	protein SCARECROW-like
TrEMBL	A0A1E5V1Z1	0.0	A0A1E5V1Z1_9POAL; Protein SCARECROW
STRING	Si021890m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13813	25	28