PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03146.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 278aa MW: 29531.3 Da PI: 9.8445

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03146.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.6	1.2e-33	82	140	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe Zmw_sc03146.1.g00130.1.am.mkhc 82 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 140 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-38	67	142	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-29	74	142	IPR003657	WRKY domain
PROSITE profile	PS50811	37.539	77	142	IPR003657	WRKY domain
SMART	SM00774	4.0E-38	82	141	IPR003657	WRKY domain
Pfam	PF03106	7.4E-26	83	140	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MPSLTPSPRT LMSSFLNEEF SPGTAFSDYW QIAIFSGKVD SLGVATVTTA ATNSAMDMGA 60 AASRSVREPR VVVQTTSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTH PGCSVRKHVE 120 RASHDLKSVI TTYEGKHNHE VPAARNSGQA GSGSGSAPSA TQASYRRQES ASGNFAHFGG 180 TAPFGSLVLP PRGHLGPAAG NFHFGMVPPG MAIPMPSLGS LAPTTMVQSS PAMQGYQGSM 240 MPGELKAELV SQSSFPRGNA APSVYQQMMS RPPFGPQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-40	73	143	8	78	Probable WRKY transcription factor 4
2lex_A	9e-40	73	143	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802032.1	1e-121	LOW QUALITY PROTEIN: probable WRKY transcription factor 2
Swissprot	Q9FG77	9e-50	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A1E5WJ69	1e-131	A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRING	Pavir.Bb02418.1.p	1e-123	(Panicum virgatum)
STRING	Pavir.J40119.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12338	22	33

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]