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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc03131.1.g00050.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 258aa MW: 27583.2 Da PI: 10.5261 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 41.5 | 2.5e-13 | 58 | 118 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIksL 54
r+h+e+Er+RR+riN +++Lr+llP as + + ++++Ka+ L ++v+++++L
Zmw_sc03131.1.g00050.1.am.mk 58 RNHSEAERKRRQRINAHLATLRTLLPAASrvspcafgsARRWRRMDKAALLGEVVRHVREL 118
68*************************999*******6666677**************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 8.64E-12 | 52 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.843 | 55 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 2.03E-10 | 58 | 119 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 58 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.6E-11 | 58 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.1E-9 | 61 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 2.4E-5 | 162 | 230 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 258 aa Download sequence Send to blast |
MSAPGLAGYF TPRYEPASKR EARTVAGMVL SQSKEAEATL DGECSAPAPA TTRSGPSRNH 60 SEAERKRRQR INAHLATLRT LLPAASRVSP CAFGSARRWR RMDKAALLGE VVRHVRELRG 120 EADAAAAGAA VAVPGERDEV GVAEGHYCWY AGERAATRHV RAWLCCADRP GLMSELSRAV 180 QSVSARPVRA EIATVGGRTR SVLELNVGGQ HAAADGGSTS SRQALQAAFR AVLLSREEGM 240 LAADCYKRQR TSAHLAKV |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 63 | 68 | ERKRRQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004957057.1 | 1e-91 | transcription factor bHLH30 | ||||
| Refseq | XP_012699568.1 | 1e-91 | transcription factor bHLH30 | ||||
| TrEMBL | A0A1E5W6B9 | 5e-95 | A0A1E5W6B9_9POAL; Uncharacterized protein | ||||
| STRING | Si033077m | 4e-91 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4114 | 35 | 69 |
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