PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03110.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 211aa    MW: 22611.1 Da    PI: 6.6804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03110.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-185099255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Zmw_sc03110.1.g00100.1.sm.mk 50 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 99
                                  69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-2150107IPR016177DNA-binding domain
SMARTSM003809.9E-3650113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-3250107IPR001471AP2/ERF domain
PROSITE profilePS5103222.99850107IPR001471AP2/ERF domain
PfamPF008471.7E-125099IPR001471AP2/ERF domain
CDDcd000185.65E-2951107No hitNo description
PRINTSPR003678.9E-115162IPR001471AP2/ERF domain
PRINTSPR003678.9E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDDTSAHEPE SPTSASSSSS SSSFSTAVGA KTPKKRPRKD TDQEGSRHPT YRGVRMRSWG  60
KWVSEIREPR KKSRIWLGTF ATAEMAARAH DVAALAIKGR AAHLNFPGQA HLLPRPASAA  120
PKDVQAAAAL AAARVFPSDA SAKSPESSTS SSDASASSQP PPPPQQDPDD ALFDLPDLLL  180
DLRCGPSSCG TAWAVDDDVL FRLEEPLMWE Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1945112977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824789.12e-72ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1N7TB573e-97A0A1N7TB57_9POAL; Transcription factor DREB4.2
STRINGOPUNC04G18530.18e-71(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]