PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03103.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 361aa    MW: 39019.4 Da    PI: 7.4078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03103.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS242.61.6e-747536197374
                          GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                                    a  aIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+++R+   +gpp++RiTg g+    ++++l +tg+rL+ fA+++++
  Zmw_sc03103.1.g00150.1.am.mk  75 NASGAILDAVEGARRIHILDLDAAHGVQWPPLLQAISERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLSAFARSIHL 151
                                   6889***********************************988888***********....9******************** PP

                          GRAS 175 pfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                   pf f++l             +++++++    +L+++p+E+laVn+v+ lh+l   +    +e  ++Lk vk +sP vv+++
  Zmw_sc03103.1.g00150.1.am.mk 152 PFCFTPLllscatsnqevagASTTTDSCVATTLELHPDETLAVNCVMFLHKLG-GP----DELAAFLKWVKAMSPAVVTMA 227
                                   *******999999999887666678888899*********************8.33....33467**************** PP

                          GRAS 243 eqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                                   e+e   ++     ++ +r++ a+++ysa+f++lea++p+ s+er  vE+e+lgrei+ +++ +g +     + le+W ++ 
  Zmw_sc03103.1.g00150.1.am.mk 228 EREPAGGGWdrvdELPRRVAVAMDHYSAVFEALEATVPPGSRERLLVEQEVLGREIEAALSYSGGR---WWRGLERWGAAA 305
                                   ***55533224449************************************************9998...7899******** PP

                          GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   ++aGF+p +ls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W+
  Zmw_sc03103.1.g00150.1.am.mk 306 RAAGFTPRSLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 361
                                   *******************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.4721340IPR005202Transcription factor GRAS
PfamPF035145.7E-7275361IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPATFLLIHP LMLLASHHHR RLRPPPPLLQ VKKRAWAAAA GKATAMLGSL HHSSSSSDTD  60
NDNKNGNTNT DNNNNASGAI LDAVEGARRI HILDLDAAHG VQWPPLLQAI SERADPAAGP  120
PEVRITGAGA DRDTLLRTGS RLSAFARSIH LPFCFTPLLL SCATSNQEVA GASTTTDSCV  180
ATTLELHPDE TLAVNCVMFL HKLGGPDELA AFLKWVKAMS PAVVTMAERE PAGGGWDRVD  240
ELPRRVAVAM DHYSAVFEAL EATVPPGSRE RLLVEQEVLG REIEAALSYS GGRWWRGLER  300
WGAAARAAGF TPRSLSAFAV SQARLLLRLH YPSEGYLVQE ARGACFLGWQ TRPLLSVSSW  360
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3575360115378Protein SCARECROW
5b3h_A3e-3575360114377Protein SCARECROW
5b3h_D3e-3575360114377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.11e-168protein MONOCULM 1-like
RefseqXP_025810769.11e-168protein MONOCULM 1-like
SwissprotQ84MM91e-146MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A3L6S3431e-168A0A3L6S343_PANMI; Protein MONOCULM 1-like
STRINGSi008068m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]