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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zmw_sc03102.1.g00070.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
MIKC_MADS |
Protein Properties |
Length: 129aa MW: 15038.2 Da PI: 9.6909 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zmw_sc03102.1.g00070.1 | genome | ZGD | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 97.5 | 5.4e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk rqvtfskRrng+lKKA+E+SvLCdaeva+i+fs +gklyeyss
Zmw_sc03102.1.g00070.1.sm.mkhc 10 RIENKVHRQVTFSKRRNGLLKKAHEISVLCDAEVALIVFSAKGKLYEYSS 59
8***********************************************96 PP
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2 | K-box | 14.8 | 1.2e-06 | 86 | 112 | 67 | 93 |
K-box 67 skKnellleqieelqkkekelqeenka 93
+ +n+l++++i elqkkek+l ++n +
Zmw_sc03102.1.g00070.1.sm.mkhc 86 ADQNQLMFDSIFELQKKEKMLIDQNGY 112
679******************999976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 129 aa
Download sequence Send
to blast |
MGRGPVQLRR IENKVHRQVT FSKRRNGLLK KAHEISVLCD AEVALIVFSA KGKLYEYSSH 60 ASMEGILERY HRYSFEERAA LDPTVADQNQ LMFDSIFELQ KKEKMLIDQN GYVNLVEHTN 120 LNRNHVLHK
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. |
Publications
? help Back to Top |
- Jia H, et al.
Characterization and transcriptional profiles of two rice MADS-box genes. Plant Sci., 2000. 155(2): p. 115-122 [PMID:10814814] - Chen C, et al.
Adapting rice anther culture to gene transformation and RNA interference. Sci. China, C, Life Sci., 2006. 49(5): p. 414-28 [PMID:17172048] - Yoshida H, et al.
superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice. Plant Biotechnol. J., 2007. 5(6): p. 835-46 [PMID:17764519] - Yao SG,Ohmori S,Kimizu M,Yoshida H
Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development. Plant Cell Physiol., 2008. 49(5): p. 853-7 [PMID:18378529] - Seok HY, et al.
Rice ternary MADS protein complexes containing class B MADS heterodimer. Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604 [PMID:20888318] - Kobayashi K, et al.
Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene. Plant Cell, 2012. 24(5): p. 1848-59 [PMID:22570445] - Wei X, et al.
Fine mapping of BH1, a gene controlling lemma and palea development in rice. Plant Cell Rep., 2013. 32(9): p. 1455-63 [PMID:23689259] - Wang H, et al.
OsMADS32 interacts with PI-like proteins and regulates rice flower development. J Integr Plant Biol, 2015. 57(5): p. 504-13 [PMID:25081486] - Lombardo F, et al.
The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice. Plant Biotechnol. J., 2017. 15(1): p. 97-106 [PMID:27336225]
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