PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03046.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 780aa    MW: 82348.8 Da    PI: 8.3065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03046.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092295316223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +Cp Cgk+F +   ++ H+r+H
  Zmw_sc03046.1.g00120.1.am.mk 295 TCPECGKTFLSDKAMHGHLRSH 316
                                   8*******************99 PP
2zf-C2H214.69.5e-05599621123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +CgksF+++  L  Hi  H
  Zmw_sc03046.1.g00120.1.am.mk 599 HECVICGKSFPTHQALGGHIAAH 621
                                   78**************9999877 PP
3zf-C2H212.30.00052725747123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+dC++sF++   L  H r+H
  Zmw_sc03046.1.g00120.1.am.mk 725 HVCSDCNMSFRSGQALGGHKRKH 747
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.367294316IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-7294316No hitNo description
SMARTSM003550.01294316IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-4296318IPR007087Zinc finger, C2H2
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-7594621No hitNo description
PfamPF139128.1E-7599622IPR007087Zinc finger, C2H2
SMARTSM003550.058599621IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556599626IPR007087Zinc finger, C2H2
PROSITE patternPS000280601621IPR007087Zinc finger, C2H2
PfamPF139121.1E-8725748IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12725747IPR007087Zinc finger, C2H2
SMARTSM003550.095725747IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MDGTRISFLL ASQPHHRVIW ASVSSQSAPF TLQQRSNGDC CLLVARRRFP DALRARGFGG  60
YYYTTTRDPA PLPRPLLRPA PEVRSVPLPT LPQANPPAAP PLSPLQSRCG SGARGFDQAA  120
STCSRSCIRA RGPVFVVGGV FHSAVFFLAV PRVLLGGGSI SANQPCDIQL FFSDLRRTLR  180
CDASRFCGKD PWKAKQATAQ HDSSLISTSP TVSTMDLTTF YAQATEAAAP SVHAGDEDVL  240
VGLTTDEAAL LKLVVQTSGL GNGPASRKGS GLSQLAVGNA DEAGEGRGGG GRDLTCPECG  300
KTFLSDKAMH GHLRSHPDRG YKGATRPAAT ASLTAVAGDK KRTKKRKAPQ KEAGASPATN  360
ISDTHAAAGE KKQTDEGELW GKWAVTAKRG RSSSTPSSAG SASAPAAAQS SSWCSEDEEA  420
ALILLEIASG CGPTSETQQS PQPVNTRDAK HQIPEVDEQP MLLGHVAQNQ MPEGPEPPQL  480
MTPDHVATCT VMAHQTPDAV QQIVQLELSP EFIIVESQMT EVKELAKQLE IPTKAVVDVV  540
RATDTFANQQ PAAPDSGAKK RKKRRLSDSE QTPETASPEF AIVKTPERRI PSPASDKKHE  600
CVICGKSFPT HQALGGHIAA HNKSGSKHGA RYDDLVVTEA IQKILANRKK STKAIIGGCM  660
GAAEASFAGA GAVGIGVQVQ GGPVACLGHE CPVAGGVQEG PVAGPAEERH DVQPPLHVPK  720
SSAQHVCSDC NMSFRSGQAL GGHKRKHWFR EKQARAALAA ASLNFDLNEM PNDVDGENQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1558562KKRKK
2558564KKRKKRR
3558565KKRKKRRL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425