PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03033.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 290aa MW: 30880.9 Da PI: 8.0925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 119 | 166 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP+ K K +i+ Av YIk+L+ Zmw_sc03033.1.g00140.1.sm.mkhc 119 RHIMRERLRRERLSQGFADLHALLPPG----TSKGGKNDIVGAAVGYIKELE 166 599***********************5....47888999**********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-14 | 114 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-12 | 115 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.249 | 115 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-7 | 119 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-5 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MDSFYFDVVQ DAVIGIGDDG YLASLGGVTL PPAPGGAFAA YQQGKSLEPG LTMSRGGGRY 60 SSGSGGANVH RRMFWYLRRI GGAAAAAPST GNVAVGADSE PSHRDAETSQ APRGSSRFRH 120 IMRERLRRER LSQGFADLHA LLPPGTSKGG KNDIVGAAVG YIKELEGRRR RLRARNDELL 180 EQEARTGSSM VVTVRAEIEQ HSVAVDVFGM VLQRLQAMEE LQVTGIGSCF DGGSMWMNVA 240 VHCQVSSPDV GKAVTNALMK ALEENAVGMQ VPGSSGPPFS CQVERGAPMW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 129 | RLRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701619.1 | 3e-81 | transcription factor BHLH148 | ||||
TrEMBL | K3XK97 | 8e-80 | K3XK97_SETIT; Uncharacterized protein | ||||
STRING | Si002320m | 1e-80 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12730 | 24 | 32 |