PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03033.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 28502.2 Da PI: 8.8282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 132 | 179 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++f+ L llP+ a K K +i+ A YIk+L+ Zmw_sc03033.1.g00040.1.sm.mkhc 132 RHIMRERLRRERLSQGFADLHALLPPgA-----SKGGKNDIVGAAAGYIKELE 179 599***********************66.....7888999**********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-14 | 127 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-12 | 128 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.805 | 128 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 132 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-5 | 134 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MANGTAPYTH GSPAMDPFYF DLQDAIIDID DVDYLTSLGD AVTLPPAPGS AFAAYQEGTS 60 LEPLTMSRGG GRCSSSGGAN VHRRMFRYLR RIGDAAAAAA SAGNVVAGAD PEPSHRAGAE 120 TSQAPRGSTR FRHIMRERLR RERLSQGFAD LHALLPPGAS KGGKNDIVGA AAGYIKELEG 180 RKRRLSARND ALIEQVARTG SSMVVNVRAE IEQHSVAVDV FEMVLQRLKA MEELRMTGIR 240 SCFDGGGMWM NVAVHCWQVV RRQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 142 | RLRRER |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701619.1 | 4e-69 | transcription factor BHLH148 | ||||
TrEMBL | A0A1E5VF49 | 1e-69 | A0A1E5VF49_9POAL; Uncharacterized protein | ||||
STRING | Si002320m | 2e-68 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12730 | 24 | 32 |