PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02967.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 428aa MW: 46870.5 Da PI: 10.5923 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92.6 | 2.9e-29 | 242 | 347 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltk 63 f+k+ tpsdv+k++rlv+pk++ae+h +g + +++ l +ed sg++W+++++y+++s++yvlt+ Zmw_sc02967.1.g00140.1.am.mk 242 FDKTVTPSDVGKLNRLVIPKQHAEKHfplhlpaaaaaavdddvvSG-ECKGVLLNFEDASGKVWRFRYSYWNSSQSYVLTR 321 89***************************99998888888777522.34899***************************** PP THHHHHHHHT--TT-EEEEEE-SSSEE CS B3 64 GWkeFvkangLkegDfvvFkldgrsef 90 GW++Fvk++gL +gD v F++ ++ Zmw_sc02967.1.g00140.1.am.mk 322 GWSRFVKEKGLHAGDAVGFYRRA-AGK 347 ********************533.444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-38 | 237 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.76E-29 | 240 | 347 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.09E-27 | 240 | 351 | No hit | No description |
PROSITE profile | PS50863 | 12.478 | 242 | 357 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-19 | 242 | 357 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-26 | 242 | 348 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MTAPRSDQRL VGGDAPVDPA SARTGKAERE AAGLLVGLPA SLWEEWTGWS TLHVNATPRP 60 RAPVSQSRLL LPRTPTRRSH AVWGRPPLSS PEPTCAAAWR VSPRPARAGT EPAPGEWQRV 120 RVQSSARASV VAPVACSPSY RLVTCPLRWI TIVCRFRGRD AVTNFRPLAD SDPDDAAELR 180 FLAARTKVEV VDMLRKHTYL DELAQNRRAF AAVAPPPSPS TNGPADSSPH PQPPSAAREH 240 LFDKTVTPSD VGKLNRLVIP KQHAEKHFPL HLPAAAAAAV DDDVVSGECK GVLLNFEDAS 300 GKVWRFRYSY WNSSQSYVLT RGWSRFVKEK GLHAGDAVGF YRRAAGKQLY IDCKVRSRKT 360 SPPGPVKAVR LFGVDLLTST PSPASAAATL QEEMTTMAMK NKRPRDFIVT SSTPHMFFKK 420 QCVDLALT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-46 | 239 | 357 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807648.1 | 1e-129 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
Swissprot | Q6L4H4 | 1e-109 | Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A2T7EAR2 | 1e-128 | A0A2T7EAR2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01826.1.p | 1e-129 | (Panicum virgatum) | ||||
STRING | Pavir.J13012.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Publications ? help Back to Top | |||
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