PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02961.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 354aa MW: 38608.7 Da PI: 6.6308 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 176 | 223 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq Zmw_sc02961.1.g00070.1.sm.mkhc 176 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 223 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.809 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 176 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-17 | 176 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-17 | 177 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.25E-14 | 178 | 227 | No hit | No description |
SMART | SM00353 | 1.0E-14 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDQAALAA LMPQRYDYAA 60 PAAVEHRQRK AARVNTTSWD SCITEQGSPA DSSSPTILSF GGHAAATAFS KADAQVPNAP 120 SYYGHSATAQ VKAPKQEVVD AGVSPFHARS VKRSYDAMVA AEAQAPVPSR PASQNQDHIL 180 AERKRREKLS QRFIALSKIV PGLKKMDKAS VLGDAIKYVK QLQEQIKGLE NEARRRPVEA 240 AVLVKKSQLC ADDDDGSSCD ENFLGGEAGA LPEIEARVSD RTVLVKIHCE SRKGALITAL 300 SEVERLGLTI MNTNVLPFTS SFLDITIMAT VGDEFCLSVK DIVKKLNQAF KSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 6e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 186 | ERKRRE |
2 | 182 | 187 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661241.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | K4ABY6 | 0.0 | K4ABY6_SETIT; Uncharacterized protein | ||||
STRING | Si036393m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |