PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02954.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 490aa    MW: 53229.5 Da    PI: 9.8248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02954.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19313361355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a++ a+ +l+g
  Zmw_sc02954.1.g00110.1.am.mk 313 YRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDSAAFRLRG 361
                                   9******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-22312369IPR016177DNA-binding domain
SMARTSM003802.8E-38312375IPR001471AP2/ERF domain
PROSITE profilePS5103223.433312369IPR001471AP2/ERF domain
PfamPF008472.3E-13313361IPR001471AP2/ERF domain
PRINTSPR003671.1E-10313324IPR001471AP2/ERF domain
CDDcd000184.61E-31313371No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32313370IPR001471AP2/ERF domain
PRINTSPR003671.1E-10335351IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MLAGSPPLPG SRIRKLLMTG SFARCSADWN PTRRYSPRKM AFLLWLRTAS TFPLLRFRFP  60
FPLAAARPRA LALSIARPHD RRELCFRAAS TTTALLALAL LSEEDVGGGM KGMFRCAIAL  120
FWHQIGRSGA AFGIAIVFAP ISLTTCSVPA TRPQDDPLQE RSTLYYSNFQ AAASSTLSPR  180
PARHSHGTAR SGLYQVRPSP PMEARQVLAV FTSTCPVPRR ESSRIHRLAA AALRASTDLS  240
VDSVSASVSS CSFAWRSLVR EFMSTTVEWH GGVPAAALYY AMPDSKDLVR ALAPPMHGAP  300
TISFSTYPCA GLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEDAAL AYDSAAFRLR  360
GDSARLNFPE LRRGGAHLGP PLHAAVDAKL HAICHDTDTP SQRQSDAPAA TVTTAPSSVS  420
SAGPKIKSEP VSSGSQSSSS ADGDVSSTGS SDVVPEMQLL DFSETPWDES ESFHLLKYPS  480
LEIDWDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20313369663ATERF1
3gcc_A4e-20313369663ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203