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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02949.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 619aa MW: 67270.6 Da PI: 10.0733 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.9 | 3.8e-40 | 395 | 473 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Zmw_sc02949.1.g00100.1.am.mk 395 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 473 6******************************98725689*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-33 | 390 | 458 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.291 | 393 | 471 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-36 | 394 | 474 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-30 | 396 | 470 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MQSYLPRKPV EVLMSALSNL QKWKSRLVAN ELPELESIIS EMKDKMKARH QRGVGRLILA 60 PLGAVDGSRR ARTGRAGSRS GTVVRLAAPA AALIALGRNT VRSPTCVRRL ANRASPSRID 120 RVLGHEITSH EWDAHRPSWS LPASRRWRTP GAVAPSSAPA MERAAYAAAP DPAVSSSLSS 180 FLQGTHATVP YATLKRLRYW TSPAASELAS TRRERDDSVL AASSPPKKKK RKMMNIPAAG 240 ANACDEFAYV SPGAAPPSLL PIMEQESSIQ REQLGYNLEA NSLALLPPST AAAAHQQATI 300 AAHDILQFYP AAAASSHYLG GGGGNPYSHH FGGSNYQAYY QQAAQASPEY YFPTLVSSAE 360 ENMASFAATQ LGLNLGYRTY FPPRGGYTYG HHPPRCQAEG CKADLSSAKR YHRRHKVCEH 420 HSKAPVVVTA GGLHQRFCQQ CSRFHLLDEF DDAKKSCRKR LADHNRRRRK SKPTDADAAD 480 KKRAQASKAA AGAKDKAGSS SKNNMDIGDG LTTQILGSAL LSKEQDQAMD LGEVVKEAVD 540 PKGKASMQQQ HAHHHGMSNH SFPFPTSSGS CFPQSQAVSS DNTSNIAQVQ EPSLAFHQHH 600 QHSNILQLGQ AMFDMDFDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 396 | 470 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 231 | KKKKRK |
2 | 465 | 482 | RRRRKSKPTDADAADKKR |
3 | 466 | 471 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960135.1 | 0.0 | protein LIGULELESS 1 | ||||
Refseq | XP_025824698.1 | 0.0 | protein LIGULELESS 1-like | ||||
Swissprot | Q01KM7 | 0.0 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0A9DKR3 | 0.0 | A0A0A9DKR3_ARUDO; Lg1 | ||||
STRING | Si022315m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |