PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02931.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 284aa    MW: 31679.7 Da    PI: 9.5274
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02931.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09142185347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    WT  E+ l++ + +++G g+W+ I+  +  +Rt+ ++  + qk+
  Zmw_sc02931.1.g00020.1.am.mk 142 LWTHHEHMLFLSGLRLYGRGNWRHISMLIE-TRTPLEVSIHAQKF 185
                                   5*****************************.*******9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.265138190IPR017884SANT domain
TIGRFAMsTIGR015571.8E-8139188IPR006447Myb domain, plants
SMARTSM007175.2E-8139188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-7140178IPR009057Homeodomain-like
PfamPF002495.7E-7142184IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-12143190IPR009057Homeodomain-like
CDDcd001673.94E-8143186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSPSQHSPLH NSNYQQLFEP LPTDMVPGQV TPKPNGVWSR SEIKTMKSLI RRHNNDVNNN  60
GKDIVDLLQE RFHYKEKHQV TDLYLDIVTE MMQTLQLQQG SGTASNINNP PPPVEEPAAM  120
DNAAVAVVPQ PGPAWYPARR RLWTHHEHML FLSGLRLYGR GNWRHISMLI ETRTPLEVSI  180
HAQKFFRKLG KAARTQRSSV NAKPCSQNPS KGKALATTDG GYNLGDSQSS SQLAAMNTQA  240
KVSSPFMYHV DQASNSGGSS QAAWTGDQQN FVPDELLEVF AQKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3526734