PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02925.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 551aa MW: 59559.1 Da PI: 10.7408

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02925.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.8e-30	485	542	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ Zmw_sc02925.1.g00040.1.am.mkhc 485 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSTLIVTYEGEHNHN 542 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.2E-17	435	481	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.0E-33	471	543	IPR003657	WRKY domain
PROSITE profile	PS50811	30.01	478	544	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	481	543	IPR003657	WRKY domain
SMART	SM00774	9.6E-37	483	543	IPR003657	WRKY domain
Pfam	PF03106	5.8E-26	485	541	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
IDPLEKRRPT RRRARLEPSI RPSTAEVILT VAGLRYSEGP GGYFIETHVL GAPLRLVFFV 60 PFFAFTPSYR LLPDISVALP ADDRRPRASS CAPGFRSAAS TDRLRGELAS SCAAFRALIS 120 CTFFFPGRCL FCFDAAARKK SHPGSRPSAS VCHWPPPPPL LVLLAETAPP VIRSDLLLGR 180 SQIILLWTLW KSSRGGRALS ALGARVMDEV EAANRAAVES CHRVLALLAQ PHQDPAQLTS 240 LAAGTDEACA KFRKVVSLLS NGGVGGEAGT SGGSGSHPKA KVASRRQNPG LFSQKGFLDS 300 NTPVVVLNSA QPSTSSAQMY PRNGALDVQS VNPLGGPPKM VQPLSAHFQF GNVSSRYHFQ 360 NQQQQKLQAK MFKRSNSGIN LKFDSMGATM SSARSFLSSL SMEGSVASLD GKSSSFHLIG 420 GPAMSDPVNA QQAPRRRCTG RGEDGTGKCA VTGRCHCSKR SRKLRVKRSI KVPAISNKIA 480 DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDSST LIVTYEGEHN 540 HNRMPTQSAQ A

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

IDPLEKRRPT RRRARLEPSI RPSTAEVILT VAGLRYSEGP GGYFIETHVL GAPLRLVFFV  60
PFFAFTPSYR LLPDISVALP ADDRRPRASS CAPGFRSAAS TDRLRGELAS SCAAFRALIS  120
CTFFFPGRCL FCFDAAARKK SHPGSRPSAS VCHWPPPPPL LVLLAETAPP VIRSDLLLGR  180
SQIILLWTLW KSSRGGRALS ALGARVMDEV EAANRAAVES CHRVLALLAQ PHQDPAQLTS  240
LAAGTDEACA KFRKVVSLLS NGGVGGEAGT SGGSGSHPKA KVASRRQNPG LFSQKGFLDS  300
NTPVVVLNSA QPSTSSAQMY PRNGALDVQS VNPLGGPPKM VQPLSAHFQF GNVSSRYHFQ  360
NQQQQKLQAK MFKRSNSGIN LKFDSMGATM SSARSFLSSL SMEGSVASLD GKSSSFHLIG  420
GPAMSDPVNA QQAPRRRCTG RGEDGTGKCA VTGRCHCSKR SRKLRVKRSI KVPAISNKIA  480
DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDSST LIVTYEGEHN  540
HNRMPTQSAQ A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	476	545	7	75	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795417.1	0.0	protein WRKY1-like isoform X1
Swissprot	Q32SG4	1e-86	WRKY1_MAIZE; Protein WRKY1
Swissprot	Q93WU6	2e-87	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A2S3IK15	0.0	A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C3I7	0.0	A0A2T7C3I7_9POAL; Uncharacterized protein
STRING	Pavir.Ia01239.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]