PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02908.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 1095aa MW: 117913 Da PI: 9.6441 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 169.4 | 4.3e-53 | 32 | 127 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvep Zmw_sc02908.1.g00160.1.am.mk 32 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEP 112 89******************************************************************************* PP NF-YB 83 lkvylkkyrelegek 97 l+vyl++yre+ege Zmw_sc02908.1.g00160.1.am.mk 113 LSVYLHRYREFEGEA 127 ************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-48 | 25 | 133 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.69E-37 | 34 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-24 | 38 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.4E-15 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.4E-15 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 3.4E-15 | 103 | 121 | No hit | No description |
SuperFamily | SSF49503 | 5.1E-30 | 614 | 716 | IPR008972 | Cupredoxin |
Gene3D | G3DSA:2.60.40.420 | 5.8E-33 | 614 | 720 | IPR008972 | Cupredoxin |
PROSITE profile | PS51485 | 39.433 | 615 | 717 | IPR003245 | Phytocyanin domain |
CDD | cd11019 | 2.01E-53 | 615 | 716 | No hit | No description |
Pfam | PF02298 | 4.3E-22 | 625 | 709 | IPR003245 | Phytocyanin domain |
ProDom | PD003122 | 2.0E-16 | 653 | 717 | IPR003245 | Phytocyanin domain |
Pfam | PF05627 | 2.2E-20 | 855 | 890 | IPR008700 | RIN4, pathogenic type III effector avirulence factor Avr cleavage site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009055 | Molecular Function | electron carrier activity | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1095 aa Download sequence Send to blast |
MDSIFPDGAT ANGGNNGGGG GAQAQQAAPA IREQDRLMPI ANVIRIMRRV LPAHAKISDD 60 AKETIQECVS EYISFITGEA NERCQREQRK TITAEDVLWA MSRLGFDDYV EPLSVYLHRY 120 REFEGEARGV VGAARGGGGG VDHHHHHQMF NSRAPATAHH HDMQVHPAMY GGAAVPPHHG 180 FAAPPPHQGQ YMPIPYPYDT YGGEHAMAAY YGAAAYGPGN GGDGSGGSAS HTSQAGGTSS 240 LEHQHPFASK ERKTSPILKA DAAKYSNQDI YERAREDVAS CNSTVAREPA AGLAAEAAGR 300 RALTGAGKHA APIGPDYITG LRFVSPAPVH ALLAVASGTA DRSAPSYHLL DSHLGWQRLL 360 WNIRRWLLSI SRSSTLPLLS YYVNPFIVHY FLSIHTIVVI CVLIKCKEGW FHLLREAVDL 420 VGPHKVGEFE VEPTFCPAPS AASRSRSARA PRSSGRRPAR SRLASRVTPH RPPFRRVPPS 480 QAAAAAGAEP LVKRQSRAVQ QTLEGADQRL VEKQRLFSES PTARPLRTSA THSALDHRRH 540 PFGSQPCRLY KPLPSRRQLA TIHTPTSRVE RSCVRSFESN HRSIFASMAA TTLRFAVFAA 600 SCALLAASVS SLPAAVFSVG DEKGWTVPLG NGTESYNHWA KRNRFQVGDV LEFKYVNDSV 660 LVVNHDEYKQ CSTEAPLNRF TDGDTKFTFD RSGLFYFVSG VPGHCEAGQR MIARVMAPSS 720 LTITPAAAPG MPPTAPVVAP TQASPNAGSP PSGPSSSGAA SSTTPTPTPT AQPSGADRVF 780 ASVVLGLVEV AFLAVYLEAA AASESSPFPS RPRERVLPLA RRHQQASKGK IFLGPLKKPA 840 SDVAGQPGLC RWQDANGRTL PKFGEWDVNN PASADGFTVI FSKARDEKKA PPAKGHISNR 900 SADRKGSRTE KMSSYNSTRT SASATLELFD PGTRQRHEHY VWPCILSNQF QFLPSPLSSF 960 PHAPTRRLLL PLRLLMADAS LSSSTAGDAP PAAPVPAADA PDAGVAAETP DPDVEFGFQR 1020 PEMGKEKLAG TVQFYERHVI LCYKGPEAWA SHVEAALPDR IPGLLAAAIK ANKPNLKKPV 1080 STDLSPLTIA SLFRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-56 | 31 | 122 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |