PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02906.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 90aa MW: 10243.6 Da PI: 9.6306 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 5.9e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA ELS+LCdaev ++ifsstg+lyey+s Zmw_sc02906.1.g00120.1.sm.mkhc 10 RIDNSTSRQVTFSKRRNGIFKKARELSILCDAEVGLVIFSSTGRLYEYAS 59 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.043 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.41E-44 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 1.06E-33 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELSILCD AEVGLVIFSS TGRLYEYAST 60 SMESVIDRYG RTKEEEQPVA NPNSELKLED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-24 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 9e-24 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 9e-24 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 9e-24 | 1 | 83 | 1 | 83 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311407.1 | 5e-53 | MADS-box transcription factor 27 isoform X3 | ||||
Refseq | XP_024311408.1 | 5e-53 | MADS-box transcription factor 27 isoform X3 | ||||
Refseq | XP_025823561.1 | 2e-53 | MADS-box transcription factor 27-like | ||||
Swissprot | Q6EP49 | 5e-52 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0E0PA54 | 7e-53 | A0A0E0PA54_ORYRU; Uncharacterized protein | ||||
STRING | OBART04G15020.1 | 2e-53 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Publications ? help Back to Top | |||
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