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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02899.1.g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 22593.2 Da PI: 8.9961 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 25 | 44 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H+r Zmw_sc02899.1.g00150.1.am.mk 25 PCTECGKRFPSWKALFGHMR 44 5******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.619 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.57E-9 | 25 | 46 | No hit | No description |
Pfam | PF13912 | 1.8E-9 | 26 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 26 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.57E-9 | 126 | 153 | No hit | No description |
Pfam | PF13912 | 7.3E-12 | 131 | 155 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 131 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
HPPPAADGAA SFARVRSSPN GDTPPCTECG KRFPSWKALF GHMRCHPERQ WRGITPPPHF 60 RVQGSTAADQ FTAQEREVAT SLLMLSGAGT GKKSLLGSPR GRKESAAGTS ASSSSTTAPA 120 AASSKCDADD HKCSVCHKGF ATGQALGGHK RCHWEGASGE AVVAATSSNC SVLATSQEAT 180 AATATALDLN LAPPGTPSPR TTNDQGRKLN AVLDLKLGY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682354.1 | 4e-78 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A3L6PLI4 | 1e-79 | A0A3L6PLI4_PANMI; Zinc finger protein ZAT3-like | ||||
STRING | Si004657m | 1e-75 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |