PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02848.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 1285aa MW: 140490 Da PI: 11.3253

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02848.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.1	5.5e-07	144	188	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr RR+++ ++++ L ++ + K +K +i++ A YI++L Zmw_sc02848.1.g00050.1.am.mk 144 HMMRERERREKLSQSYADLHAMVAAR-----SKGDKNSIVQSAAIYIHEL 188 889********************7.....6999999*******998 PP
2	WRKY	96.9	1.3e-30	1219	1277	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+ Zmw_sc02848.1.g00050.1.am.mk 1219 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 1277 69***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.369	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-11	139	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	143	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-5	144	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-5	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF10533	1.4E-12	1174	1216	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.5E-33	1206	1277	IPR003657	WRKY domain
PROSITE profile	PS50811	29.987	1213	1279	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-26	1216	1277	IPR003657	WRKY domain
SMART	SM00774	2.5E-38	1218	1278	IPR003657	WRKY domain
Pfam	PF03106	4.1E-26	1220	1276	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1285 aa Download sequence Send to blast
LVYFPRRAQP PNRCLFKPAF ERHQGDNQTS PLATPGPPRQ RRLLARSRRE MQMDVGAPYF 60 YAGFHDEIPC FYPHGAAPAA SPELLPFGFD STSPLLEQPV APELQTSGTA PQGSTWTNLQ 120 TREEEEGRRR QPAGAVESSR GFRHMMRERE RREKLSQSYA DLHAMVAARS KGDKNSIVQS 180 AAIYIHELKG AREQLRRRNE ELKARILGHD ARQPSVKVDF EVDDPASGTY CMIGALRRLR 240 SMGVKARGIR SSMSGGKLWT EMNVETTGRG GGSDEGSRDE AAAAGGSLKL TPFQEPPPPA 300 AATAATAGAG AGARGRLRRR TCKISVQFKI SIFFASSHKP PHHTTSSPVA LSSRTRTKAS 360 TTVSSLPDRR GRGKHQSSVW SFGRAKRHYR ALATRARVLQ WIGFGSRRRR HWTGGSVVSR 420 RVEGPVSLRI GLAYTAPHCS HPMAWPQGRI KDACATSAVS VHIGRLLSPA PCAAGVCSKN 480 RRSRRAKRLN PGRRSSMSIV VTDLSAVIKD DDVQVPRSSY VEPVASTDDC ICTPEGKVED 540 EAAPGTGRRR RLVVNLGRRS RSARARRRAC VVRSGERGEE RPARLGPPDG ESGTKHALIP 600 ASLRVARPER LLAAWSNGYS VCDCPALLSG KSGGRRPKNR TRRYYCSHTS ATRHSQHSVK 660 VARERREARE EQGEERERER EKPRGPPPPL LLLASDTAHT FDETAASPEP KPTSPSIIPK 720 KKRERGRGTK NRRHGKSPRA GQGRTRWTAA IIPGPHRWPR RSIFRVTEGG IRDERAQSRI 780 KKEAKSEGTA PGPGPGVAWP PYSYLFVYLL SRSLHSAYRP GLLPPLPRAS SSSPVRPAER 840 SLSLSSAPVA PAVVPGEARL RPCEVRLLHL LLFFLSATCC QDHGRSRARR RWGMEPLSVE 900 GMEEANRAAV QSCHRVLALL SNPHGHLVSN KDLAAATGEA VSKFGSLTSK LASGDGHQGH 960 AKVRNVKRPL PIIDSNLFLE SPAVAAAAAT RTPRPGPSTS LQLFSRYQQQ QGEGSGSSSK 1020 EPVRIPAHFP KRLLLDNPAV DALPIKLVQP VSVAPPAGPP HPALPAAHLQ FIQQHQSYQR 1080 YQFMQQMKIQ SEMMKRSSLG DQGQQGGSGG AAGGKGVNLK FDGSNCTASS SRSFLSSLSL 1140 EGSLASLDGS RASRPFQLVS GSQTSSNPEP GVQRRKCTGR EDGSGRCATR CHCAKKRKLR 1200 IRRSIKVPAI SNKVADIPAD EFSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCV 1260 DDPSMLIVTY EGDHNHNRAL AQPAA

Sequence ? help Back to Top

Protein Sequence Length: 1285 aa Download sequence Send to blast

LVYFPRRAQP PNRCLFKPAF ERHQGDNQTS PLATPGPPRQ RRLLARSRRE MQMDVGAPYF  60
YAGFHDEIPC FYPHGAAPAA SPELLPFGFD STSPLLEQPV APELQTSGTA PQGSTWTNLQ  120
TREEEEGRRR QPAGAVESSR GFRHMMRERE RREKLSQSYA DLHAMVAARS KGDKNSIVQS  180
AAIYIHELKG AREQLRRRNE ELKARILGHD ARQPSVKVDF EVDDPASGTY CMIGALRRLR  240
SMGVKARGIR SSMSGGKLWT EMNVETTGRG GGSDEGSRDE AAAAGGSLKL TPFQEPPPPA  300
AATAATAGAG AGARGRLRRR TCKISVQFKI SIFFASSHKP PHHTTSSPVA LSSRTRTKAS  360
TTVSSLPDRR GRGKHQSSVW SFGRAKRHYR ALATRARVLQ WIGFGSRRRR HWTGGSVVSR  420
RVEGPVSLRI GLAYTAPHCS HPMAWPQGRI KDACATSAVS VHIGRLLSPA PCAAGVCSKN  480
RRSRRAKRLN PGRRSSMSIV VTDLSAVIKD DDVQVPRSSY VEPVASTDDC ICTPEGKVED  540
EAAPGTGRRR RLVVNLGRRS RSARARRRAC VVRSGERGEE RPARLGPPDG ESGTKHALIP  600
ASLRVARPER LLAAWSNGYS VCDCPALLSG KSGGRRPKNR TRRYYCSHTS ATRHSQHSVK  660
VARERREARE EQGEERERER EKPRGPPPPL LLLASDTAHT FDETAASPEP KPTSPSIIPK  720
KKRERGRGTK NRRHGKSPRA GQGRTRWTAA IIPGPHRWPR RSIFRVTEGG IRDERAQSRI  780
KKEAKSEGTA PGPGPGVAWP PYSYLFVYLL SRSLHSAYRP GLLPPLPRAS SSSPVRPAER  840
SLSLSSAPVA PAVVPGEARL RPCEVRLLHL LLFFLSATCC QDHGRSRARR RWGMEPLSVE  900
GMEEANRAAV QSCHRVLALL SNPHGHLVSN KDLAAATGEA VSKFGSLTSK LASGDGHQGH  960
AKVRNVKRPL PIIDSNLFLE SPAVAAAAAT RTPRPGPSTS LQLFSRYQQQ QGEGSGSSSK  1020
EPVRIPAHFP KRLLLDNPAV DALPIKLVQP VSVAPPAGPP HPALPAAHLQ FIQQHQSYQR  1080
YQFMQQMKIQ SEMMKRSSLG DQGQQGGSGG AAGGKGVNLK FDGSNCTASS SRSFLSSLSL  1140
EGSLASLDGS RASRPFQLVS GSQTSSNPEP GVQRRKCTGR EDGSGRCATR CHCAKKRKLR  1200
IRRSIKVPAI SNKVADIPAD EFSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCV  1260
DDPSMLIVTY EGDHNHNRAL AQPAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-19	1206	1277	2	72	WRKY transcription factor 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10250	32	42