PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02845.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 648aa    MW: 71344 Da    PI: 7.1428
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02845.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-061321441426
                                     --TTTTT-SS-SS CS
                         zf-CCCH  14 tCkyGdrCkFaHg 26 
                                      CkyG++C+F+H+
  Zmw_sc02845.1.g00040.1.sm.mkhc 132 SCKYGASCRFSHD 144
                                     7***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.441115146IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.113159184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.707.2E-41362496IPR013785Aldolase-type TIM barrel
SuperFamilySSF513953.02E-47366606No hitNo description
CDDcd028012.32E-66366549No hitNo description
PfamPF012071.3E-26369497IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360450468IPR018517tRNA-dihydrouridine synthase, conserved site
Gene3DG3DSA:3.20.20.706.4E-12500556IPR013785Aldolase-type TIM barrel
PfamPF012076.7E-6504554IPR001269tRNA-dihydrouridine synthase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAATAPATDP PDSSPAVASA SSPFHPTPEE LVARAVAPVK PAFLRPPPVR DAPKEEGKAG  60
GGVTAEKKSK RQLRRERQQS TEHIGKFCVF PVIEDIVHKT SNMLGLTVYR LNEKKSTSHL  120
CIEVGKSGNV DSCKYGASCR FSHDINAYLA QKPADLEGTC PFTASGMLCP YGLTCRYLGT  180
HKDNLSSENC PEGNREINSL NKDTQKLLWK NKYDFPKAST QIKLLGLKDI KKNKVNAASD  240
ELKADNDYPD KSCEQNGNGN CEFPCSISVS VKPESALCKE TDNSGGEALV ANSVHCDEPR  300
PLKKSKVEAD ETQIQGAGIH DKEAESENHK LNYGFEVPSD NQNSCRIDLI TTPHLREKKI  360
IDFRGKLYLA PLTTVGNLPF RRLCKTLGAD ITCGEMAMCS NLLQGQASEW ALLRRHSSED  420
LFGVQICGPY PDTIARTVEL VDNECSVDFI DINMGCPIDI VVNKGGGSSL LTKPMRIKSI  480
VQAASTVTEK PITVKCAQKA PDNLHVIGNG DVFSFTDWNK HLSDCSKISS CMIARGALIK  540
PWIFTEIKEQ KHWDITSGER LNILKDFVRF GLEHWGSDSK VGLLDVIPQR LNWRPPSYYG  600
RDDLETLMVS DSAADWIRIS EMLLGKVPEG FTFAPKHKSN AYDRAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A6e-1536356127266tRNA-dihydrouridine synthase B
6ei9_B6e-1536356127266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824565.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A3L6QB050.0A0A3L6QB05_PANMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGSi009538m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]