PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02836.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 757aa MW: 81750.5 Da PI: 9.7151

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02836.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	331	353	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk F + L H+ +H Zmw_sc02836.1.g00160.1.am.mk 331 FRCALCGKAFASYQALGGHMASH 353 89******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.575	331	358	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.35E-7	331	405	No hit	No description
Pfam	PF13912	4.7E-11	331	355	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	331	353	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	333	353	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.9E-7	382	405	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	383	410	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.1	383	405	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	385	405	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MHTHTYAQTH MTGAVCSKED WSSTSSSDQA AHASRCFESR EPSRNGDRTP MVMGAATRRH 60 YLPCSVAVAD GSVDQVVVVA SQGPPGPRPL ASCRAVRHRS RKVHGLGDQS VADDRLSRDA 120 TFVRAAGLTR RQRWVFGSLR LGDEWRWWWQ LGPDARGLTQ ANAVELVSGV VATAAQVRGP 180 AAATTSRQGV TSVEFRFSYH QLLASSSRAG DFKRYSVFIS GIKVRGRSSE LDPDKRQPTA 240 AVHRRACAPS NICYQSPDSR DHLITRISFS SLVPRRLVGP ITSRWVMRQG EYLSLCLTAL 300 AAACRAEHRV HGAPQPSAPA PVTSSAPPLD FRCALCGKAF ASYQALGGHM ASHRKPGTAP 360 PFVQNEDATP SAAGEEGEPR RRHVCTVCRR GFATGQALGG HKRFHYLHGP SVSASLRTEA 420 GSRAGWFDLN VAPVDCVKGD DEGEETQSRC APAKKKQRRG PGKTDRQPWA QDPTGPLLPS 480 ALAVAASLPY PVLVVSTSLW CRLLPPTDGT KSYSWFQILN DSMLCHLFPC VLGWLVDVDP 540 NHVAPTQIFV PVSERELQYS GHSPAPLRLC EMPNLPIAAA ATTTNPPFLA AQRTKTIMVG 600 TRPAGDSGVP INAARTQRLT IDAQLGTANF SGPFSGWYGL QLRIVLALVP ASVTGGVHSG 660 LRKQYFGAVK SCIIPSWFMD RSVSDTMVTC RAERSCSSTE EEERSKESKE VVVSPSHVSG 720 TTAIAHSAET IQGSTGTPHR PRPCGITASW RTALQAV

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MHTHTYAQTH MTGAVCSKED WSSTSSSDQA AHASRCFESR EPSRNGDRTP MVMGAATRRH  60
YLPCSVAVAD GSVDQVVVVA SQGPPGPRPL ASCRAVRHRS RKVHGLGDQS VADDRLSRDA  120
TFVRAAGLTR RQRWVFGSLR LGDEWRWWWQ LGPDARGLTQ ANAVELVSGV VATAAQVRGP  180
AAATTSRQGV TSVEFRFSYH QLLASSSRAG DFKRYSVFIS GIKVRGRSSE LDPDKRQPTA  240
AVHRRACAPS NICYQSPDSR DHLITRISFS SLVPRRLVGP ITSRWVMRQG EYLSLCLTAL  300
AAACRAEHRV HGAPQPSAPA PVTSSAPPLD FRCALCGKAF ASYQALGGHM ASHRKPGTAP  360
PFVQNEDATP SAAGEEGEPR RRHVCTVCRR GFATGQALGG HKRFHYLHGP SVSASLRTEA  420
GSRAGWFDLN VAPVDCVKGD DEGEETQSRC APAKKKQRRG PGKTDRQPWA QDPTGPLLPS  480
ALAVAASLPY PVLVVSTSLW CRLLPPTDGT KSYSWFQILN DSMLCHLFPC VLGWLVDVDP  540
NHVAPTQIFV PVSERELQYS GHSPAPLRLC EMPNLPIAAA ATTTNPPFLA AQRTKTIMVG  600
TRPAGDSGVP INAARTQRLT IDAQLGTANF SGPFSGWYGL QLRIVLALVP ASVTGGVHSG  660
LRKQYFGAVK SCIIPSWFMD RSVSDTMVTC RAERSCSSTE EEERSKESKE VVVSPSHVSG  720
TTAIAHSAET IQGSTGTPHR PRPCGITASW RTALQAV

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14898	17	18