PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02823.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 349aa MW: 38490.2 Da PI: 9.2048

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02823.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	241	262	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+++F++ + H+r+H Zmw_sc02823.1.g00140.1.am.mk 241 SCPVCDRHFKTEKAVHGHMRSH 262 8********************9 PP
2	zf-C2H2	11.4	0.00097	288	310	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg F ++ L H +H Zmw_sc02823.1.g00140.1.am.mk 288 YSCEHCGSQFETRQALGGHRASH 310 99**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.19E-5	229	262	No hit	No description
SMART	SM00355	0.14	240	262	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	240	262	IPR007087	Zinc finger, C2H2
Pfam	PF12171	1.9E-5	242	262	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.066	288	310	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.0E-5	288	311	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.614	288	315	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	290	310	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MQKRGTAREP RNRTVSTKAI LILGIDSGCR FPERNAPLAH GHGLASASYG VSDVTKNPSG 60 TSEDFKRNGR WIRAVRWDLD GQGVVCPCAF KTTSLLVQKP LPKLALQSLK FHSFPEPRLQ 120 GRRRRYGDVC LAVPATLTAT ARTSYIDPTL TGSSSSLDEA KWTPRVCSQS IVRVVAMDGS 180 TQVFFVGVAY GRLLSSVAGG SGGDEPRQPW HPSSVHEADS APAQRKQRST SNMEEGQGPC 240 SCPVCDRHFK TEKAVHGHMR SHPDRAWRGM EEPHPTDPTA MDEKQYRYSC EHCGSQFETR 300 QALGGHRASH NGKQGCFRLS RQPTAMAAQP RHVLPFDLND PAPEHREEE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MQKRGTAREP RNRTVSTKAI LILGIDSGCR FPERNAPLAH GHGLASASYG VSDVTKNPSG  60
TSEDFKRNGR WIRAVRWDLD GQGVVCPCAF KTTSLLVQKP LPKLALQSLK FHSFPEPRLQ  120
GRRRRYGDVC LAVPATLTAT ARTSYIDPTL TGSSSSLDEA KWTPRVCSQS IVRVVAMDGS  180
TQVFFVGVAY GRLLSSVAGG SGGDEPRQPW HPSSVHEADS APAQRKQRST SNMEEGQGPC  240
SCPVCDRHFK TEKAVHGHMR SHPDRAWRGM EEPHPTDPTA MDEKQYRYSC EHCGSQFETR  300
QALGGHRASH NGKQGCFRLS RQPTAMAAQP RHVLPFDLND PAPEHREEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J33608.1.p	2e-48	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29