PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02818.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 889aa    MW: 96024 Da    PI: 9.9577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02818.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018387408223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +Cp Cgk+F +   +  H+r+H
  Zmw_sc02818.1.g00060.1.am.mk 387 TCPECGKTFLSDKAMYGHLRSH 408
                                   8*********999999999999 PP
2zf-C2H212.20.00054743765123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+Cp C ksF+++  L  H   H
  Zmw_sc02818.1.g00060.1.am.mk 743 YVCPTCLKSFPTHQALGGHKAAH 765
                                   9************9998887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.367386408IPR007087Zinc finger, C2H2
SMARTSM003550.011386408IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.04E-6386408No hitNo description
PfamPF139123.0E-4388410IPR007087Zinc finger, C2H2
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6738765No hitNo description
PROSITE profilePS501578.995743765IPR007087Zinc finger, C2H2
PfamPF139123.5E-9743766IPR007087Zinc finger, C2H2
SMARTSM003550.18743765IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280745765IPR007087Zinc finger, C2H2
PfamPF139122.1E-8833856IPR007087Zinc finger, C2H2
SMARTSM003550.52833855IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182833855IPR007087Zinc finger, C2H2
PROSITE patternPS000280835855IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MLGLIRDERD GDFLIPTLAE RHGRGTMTDR STERASPRAS SRPPASWRSG TGDRTVIEGD  60
DDESSCPSDT CADCSKRAWP GDWWRPVGLY IIIRRAELAI MAFEFYLTVS TSKSKSKAAN  120
VRAGATAQQP HTPHVHLHAS GLSPARCDGW KEICSLISSL VQAAIQTTPT RGRRSSFWRL  180
HNKQRPAASS QLSAPGPRTA RSFQLPSRLG FAGSCGPRGR VRAASSICCV RAGLFRACRA  240
FFVPRSRHIQ VAYLLGRALG AVVWFSWVRL VLAVRRSPAD CDASGFDRLP IPVPPRETQI  300
LCDPSTTTST MDLRAYCIKA TEAASALSIH SEDDEEVVKL TSNAVLLKLE VEAGTSVGVT  360
ASCKGSGLSP LGLDNAKAAG SRGRDLTCPE CGKTFLSDKA MYGHLRSHPE RGYKGAIRPD  420
ATASVTAVAG DKKPERKVPQ KEAGESPATN MSVTTPAVAG EKRQKEESWL WTKWSVTAKR  480
RRGSSTPSAA SAPVVAAQSS SSCSEEEEAA MILLEIASGV TTSETQQSRQ TVSTRDAKHQ  540
IPEVDEQPML LDHVARNQMI PEFAQLMSPD HVACDVMANQ TLEDGQQIVQ PELAPVVILE  600
SQTPEIKELT VPKDAVVAMF QDKKTPANQQ QRAAPGRGAK KSKKRRDGQQ IVQPELAPVV  660
ILESQTPEIK ELTVPKDAVV AMFQDKKTPA NQQQRAAPGR GAKKSKKRRV LNAKKTPETA  720
PPEAANVKQP VNRVPSRASN KKYVCPTCLK SFPTHQALGG HKAAHNKGGG GKHGVYHDDP  780
AMVQAMRNIL ARQKQSSNAV IGGTAVAEGA VIGAGQDQER HDSGPPVPPA AQHVCAECNM  840
AFRSGQALGG HKRKHWYLVK QQAKAAPNAA LRDFDLNELP RDVEGENKP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425