PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02800.1.g00160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 154aa MW: 16814.7 Da PI: 7.6034 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Zmw_sc02800.1.g00160.1.am.mk 21 YSCSFCKREFRSAQALGGHMNVH 43 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.31E-6 | 18 | 48 | No hit | No description |
Pfam | PF13912 | 2.1E-6 | 21 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.24 | 21 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 21 | 43 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 23 | 43 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009755 | Biological Process | hormone-mediated signaling pathway | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEREQQPWSF MASFNWPPRS YSCSFCKREF RSAQALGGHM NVHRRDRARL RHTGSHSPPP 60 PPQPPANASS KAPAALAKPP PPVPNLNYPP PLLPYHRDGG KKRSWTDDVS TGLGVGLLQS 120 SCTTAASSTD PAVGPHPEDD DDDDLDLELR LGVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-14 | 16 | 43 | 2 | 29 | superman protein |
2l1o_A | 5e-14 | 16 | 43 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804370.1 | 8e-38 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A3L6QJZ5 | 5e-38 | A0A3L6QJZ5_PANMI; Transcriptional regulator SUPERMAN-like | ||||
STRING | Pavir.Ab00024.1.p | 3e-34 | (Panicum virgatum) | ||||
STRING | Sb04g000270.1 | 1e-33 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |