PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02793.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 350aa MW: 38247.6 Da PI: 7.79

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02793.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.9	1.3e-13	24	101	6	86
trihelix 6 evlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyf 82 + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g++++pk qCk++++ l+k+yk +k+ ++ ++ yf Zmw_sc02793.1.g00040.1.am.mk 24 XTSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKTPKsdaQCKNRIDTLKKKYKVEKAKHNS-------SWTYF 97 689****************************878899988765559**********9998886.......5 PP trihelix 83 dqle 86 ++l+ Zmw_sc02793.1.g00040.1.am.mk 98 HRLD 101 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.5E-20	22	103	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGDDAVASPS PSPSPSPLPV ADXXTSALID AWGERFVALG RGSLRHPQWQ EVAEVVSSRD 60 GYSKTPKSDA QCKNRIDTLK KKYKVEKAKH NSSWTYFHRL DELLAPIYKP GSGSSSGARS 120 APPMVPPRFS FPQRTRTPLQ PSAVAKRRIP SPPTQPSSSS GSSDGFPPEP PSATVANGKK 180 PRVEEPAPAN GAESNNRAQS LRELAQAIRR FGEVYERIES SKREQELRME RERLEAAREL 240 EDQRVQFFLK MQMELSKATD GAPSATPMAA ATAIDGNGSR RAAMATDVAT SSNHKVRYRS 300 MDSRHPHTAQ QPQYQHSQNN SGAAAPASGN GSDTENKEDE DMEDEDEDSQ

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGDDAVASPS PSPSPSPLPV ADXXTSALID AWGERFVALG RGSLRHPQWQ EVAEVVSSRD  60
GYSKTPKSDA QCKNRIDTLK KKYKVEKAKH NSSWTYFHRL DELLAPIYKP GSGSSSGARS  120
APPMVPPRFS FPQRTRTPLQ PSAVAKRRIP SPPTQPSSSS GSSDGFPPEP PSATVANGKK  180
PRVEEPAPAN GAESNNRAQS LRELAQAIRR FGEVYERIES SKREQELRME RERLEAAREL  240
EDQRVQFFLK MQMELSKATD GAPSATPMAA ATAIDGNGSR RAAMATDVAT SSNHKVRYRS  300
MDSRHPHTAQ QPQYQHSQNN SGAAAPASGN GSDTENKEDE DMEDEDEDSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815450.1	1e-136	trihelix transcription factor ASIL2-like
TrEMBL	A0A0E0K1B1	1e-139	A0A0E0K1B1_ORYPU; Uncharacterized protein
STRING	OPUNC02G18950.1	1e-140	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2404	30	69