PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02759.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 35699.7 Da PI: 4.274 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.6e-19 | 139 | 190 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++vAeIrdp+ +g r++lg+++ + +Aa+a+++a+ +++g+ Zmw_sc02759.1.g00140.1.sm.mk 139 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDLPIDAARAYDRAAFRMRGA 190 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 138 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-35 | 139 | 203 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.56E-18 | 139 | 198 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-21 | 139 | 198 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.998 | 139 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-14 | 139 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 140 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 179 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDFTGEADDF ALDFIRDLLL GNDDGFPEAS WVVSDDPSSF PVLPPPTVEP AFEPMPFSSH 60 HQQQQEEELP EWYVDMTHDH TCAAPAAAVF EGAFLVAQDP AQPVMITFES EQLSPVSSHE 120 WAASAPAPAV PAPVEDFRKY RGVRQRPWGK YVAEIRDPKR RGSRVWLGTY DLPIDAARAY 180 DRAAFRMRGA KAILNFPNEV GTRGADLLAS APASAKQGAA AKKRKLQQVD ESDVEVVAVV 240 NKAAKVDEVP SWTTSTSVSS TSSPSSISTC PATEFVSSTV TSTETMVAGD GAEEFPGTPS 300 SWSWEQSWEE LLCGLSPHLA LIDMAYTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-25 | 138 | 202 | 4 | 68 | ATERF1 |
3gcc_A | 5e-25 | 138 | 202 | 4 | 68 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140538.1 | 2e-78 | uncharacterized protein LOC100272603 | ||||
TrEMBL | B4FPJ9 | 4e-77 | B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | K4JFF8 | 4e-77 | K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM5G805505_P01 | 7e-78 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |