PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02756.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 296aa MW: 30997.7 Da PI: 9.6168 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.0007 | 116 | 138 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+dCg+s+ L H ++H Zmw_sc02756.1.g00060.1.sm.mk 116 YTCKDCGRSYAKFRALGGHVSLH 138 9*********9888887777766 PP | |||||||
2 | zf-C2H2 | 16.8 | 2e-05 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+Fs L H+r H Zmw_sc02756.1.g00060.1.sm.mk 175 HVCRKCGKVFSKGTALGGHMRAH 197 79*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.702 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 116 | 138 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0013 | 116 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.28E-8 | 116 | 138 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.28E-8 | 170 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 174 | 199 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.2E-8 | 174 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 175 | 197 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.612 | 175 | 202 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 177 | 197 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGSSSPPLRR LRPDDDDADK GRFVSDDGVR DLRPQSPTRT WESDRTISDD DDDVSPASVL 60 RTEPNERVVG VDGGWATTGK RSRSTEGKQA ATAAPAAKQL PRPVPPPRDD QAPLKYTCKD 120 CGRSYAKFRA LGGHVSLHRI REREAAAAAA AAAGTGARDG GALAHRGRKS EGRTHVCRKC 180 GKVFSKGTAL GGHMRAHAGD AAVAPVVPEG NKKRCLEPAV DDFVASSTPG LSSAAPIMPE 240 GNKKRCHEPA VDDVAAPPTA GVSSAAPIKT EEASSPAPVR SGRVLLFGVD ISRPPV |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18437 | 6 | 10 |