PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02742.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 679aa MW: 73393 Da PI: 9.5847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02742.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	474	517	4	52
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +h + ErrRR+r+N++fe Lr llP+ K +Ka++L k+ eY++ Zmw_sc02742.1.g00060.1.am.mkhc 474 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLEYMN 517 78999******************95.....599**********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.466	470	519	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-16	471	537	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-15	473	539	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-9	474	517	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-12	476	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.92E-5	485	524	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
TPLDKSWPPA ALYALAASPS IASEPNPTSS TTAAVQTSPD YFSLHSRPHR PQLATTSFDS 60 RGYKRRSHGR RRRELSRLSP PRLMDALFVL GQESRLRILR QAAARLPGCV YICTWVPLLA 120 GSGPASSSSS SSAATSARRL LRCVDAWLCD DGARGEGGRV RALFDAYRGS LCAAVKGCVP 180 GWAYIDGRAY MELPARDLTN SASMPDQQQF YQEAGIKMII KFNLPPANGN NTQMAAFMGC 240 ESGEIEVGMS TAASGSPGSL ETSLQQVFSE DFFQQSLLEE LLQLPPTRPS SPSVSVDSPA 300 AEGSTSLLRS TVAATPSSVE RQVPPPPPMR HPRPPLPAAL FGRHGYVHFP SPESDDALMA 360 QAMLDVISAP STSSLPSPCS PPPQGYHRAR RWPRRWGTAS AFWPYNPALA PRVPRRQPGA 420 PGQRMIKMGF SILRRMHLVQ RFSRERDPAA ATAQQRCQDD EAAEPAVPSS SQLNHMISER 480 RRRERLNESF EALRGLLPPG SKKDKATVLA KTLEYMNILV SQIADLEARN RSLESRAHQR 540 AISGCKELIM YSSEPQAAPL HQGLSGTTSE GVQVHVHLNS SGGEASTSSS SLSRPQEVSL 600 RVVVRAEGNV AALVTRVLAV IRETGRFTVA SVDARRPGDG GIAQATFGLR AQVADFDVVS 660 LKEAVMKAAE DSTTTPSDD

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

TPLDKSWPPA ALYALAASPS IASEPNPTSS TTAAVQTSPD YFSLHSRPHR PQLATTSFDS  60
RGYKRRSHGR RRRELSRLSP PRLMDALFVL GQESRLRILR QAAARLPGCV YICTWVPLLA  120
GSGPASSSSS SSAATSARRL LRCVDAWLCD DGARGEGGRV RALFDAYRGS LCAAVKGCVP  180
GWAYIDGRAY MELPARDLTN SASMPDQQQF YQEAGIKMII KFNLPPANGN NTQMAAFMGC  240
ESGEIEVGMS TAASGSPGSL ETSLQQVFSE DFFQQSLLEE LLQLPPTRPS SPSVSVDSPA  300
AEGSTSLLRS TVAATPSSVE RQVPPPPPMR HPRPPLPAAL FGRHGYVHFP SPESDDALMA  360
QAMLDVISAP STSSLPSPCS PPPQGYHRAR RWPRRWGTAS AFWPYNPALA PRVPRRQPGA  420
PGQRMIKMGF SILRRMHLVQ RFSRERDPAA ATAQQRCQDD EAAEPAVPSS SQLNHMISER  480
RRRERLNESF EALRGLLPPG SKKDKATVLA KTLEYMNILV SQIADLEARN RSLESRAHQR  540
AISGCKELIM YSSEPQAAPL HQGLSGTTSE GVQVHVHLNS SGGEASTSSS SLSRPQEVSL  600
RVVVRAEGNV AALVTRVLAV IRETGRFTVA SVDARRPGDG GIAQATFGLR AQVADFDVVS  660
LKEAVMKAAE DSTTTPSDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	67	KRRSH
2	478	483	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792416.1	0.0	putative transcription factor bHLH041 isoform X1
TrEMBL	A0A2T7F3R8	0.0	A0A2T7F3R8_9POAL; Uncharacterized protein
STRING	Si019540m	1e-180	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3977	33	67