PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02727.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 371aa MW: 40642.9 Da PI: 8.4347 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.8e-06 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Zmw_sc02727.1.g00010.1.am.mk 84 FVCEICNKGFQRDQNLQLHRRGH 106 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H + + Zmw_sc02727.1.g00010.1.am.mk 175 WRCERCGKRYAVHSDWKAHVKGC 197 58*****************9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-8 | 83 | 106 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 83 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.5E-5 | 84 | 106 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 87 | 140 | 170 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.4E-4 | 163 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.51E-8 | 170 | 195 | No hit | No description |
SMART | SM00355 | 99 | 175 | 195 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MLSDLSSDQE ATGSSSHGGD MASYVLSSPL FLAPAAATAL LPQPPPPEQP RAGAKRKRSQ 60 PGNPDPDAEV VALSPRTLVA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTAPSG 120 SGGGGRQQGE AAQPPRKRVY VCPEPTCVHH DPTRALGDLT GIKKHFSRKH GEKRWRCERC 180 GKRYAVHSDW KAHVKGCGTK EYRCDCGILF SRWVDAFLTE FMYRSCPGPA RFLAVLGNIT 240 ADHNPNNPLF FLPQQEAPLL QQIHHSTYLD LPVVDATVST AASVTGDSVA DTISFGLIPE 300 GSVAALHAAG DVGQRRLTRD FLGVDHSEVE ELQLPLCATV PRVASCATDL TRQYFVGERL 360 PPVNNTWSNN F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-19 | 171 | 219 | 3 | 50 | Zinc finger protein JACKDAW |
5b3h_F | 1e-19 | 171 | 219 | 3 | 50 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269|PubMed:18725639, ECO:0000269|PubMed:18774969, ECO:0000269|PubMed:18790997, ECO:0000269|PubMed:24280027, ECO:0000303|PubMed:19304997}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269|PubMed:25036785, ECO:0000269|PubMed:25573482, ECO:0000269|PubMed:25850808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467214.2 | 1e-145 | protein indeterminate-domain 12 | ||||
Swissprot | B1B534 | 1e-118 | EHD2_ORYSJ; Protein EARLY HEADING DATE 2 | ||||
TrEMBL | A0A1B6QKP8 | 1e-143 | A0A1B6QKP8_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G011357_P01 | 1e-137 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13096 | 28 | 32 |