PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02718.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 698aa MW: 74543.9 Da PI: 6.851 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.1 | 9.1e-20 | 527 | 623 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 +kvl++sdv+++gr+vlpkk ae+h ++k++ ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv++n+L+ Zmw_sc02718.1.g00200.1.sm.mkhc 527 QKVLKQSDVGSLGRIVLPKKEAETHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQ 604 79*************************999***********7778*******99777777777777.************ PP TT-EEEEEE-SS.SEE..EEE CS B3 76 egDfvvFkldgr.sefelvvk 95 egDf+v++ ++ ++++++++ Zmw_sc02718.1.g00200.1.sm.mkhc 605 EGDFIVIY--SDvKSGKYLIR 623 ********..55588877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-27 | 519 | 628 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.26E-33 | 524 | 625 | No hit | No description |
SuperFamily | SSF101936 | 3.73E-22 | 525 | 621 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.63 | 526 | 628 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-19 | 526 | 628 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-16 | 527 | 622 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MDASAGSSPP LSQQNRPKYG DGRGEEPAGE IGGEAGDDFM FADDTFPSLP EFPGLSSPSS 60 STYSSSSSSN SSSAYTNAAG VGRGFVDGAA GEPSEPVSAA EGFDALEDID QILDFASLSV 120 PSWDSEALFP DMGMMIEDAM SAPPHPVGDV PDGRDQWKPL PEGSGGDEPC MDAAAGDDLP 180 RFFMEWLTNN RESISAEDLR RIRLRRSTIE AAAARLGGGR QGTMQLLKLI LTWVQNHHLP 240 KKRPRGAMEE AAGSHGHTQL LSPGMNSGYG FPAGGQDIDG AAGTSWVPYQ QSFTPLPYGG 300 EGTVFPSGAG QQQCMFRQQS CGTSSVVVNS QPFSPPTVGD MHAASGGNLS WPQQYVQFPG 360 ASTVSYPMPR VVPQPFSSGF AGQYTMAGSQ RMAGVETSAT KEARKKRMAR QRRLSCLQQE 420 RRSQRINLGQ IQGAALQEEP SPLAAHSAPV TPSAGGWGSW PWSGQQIRNP LSKSNSSTPM 480 FQVPSPEELP LAASSARQDQ SSQRATAASD KRQSGGKADK NLRFLLQKVL KQSDVGSLGR 540 IVLPKKEAET HLPELKTRDG ISIPMEDIGT SRVWNMRYRF WPNNKSRMYL LENTGDFVRS 600 NELQEGDFIV IYSDVKSGKY LIRGVKVRAP ALHEQANGSR ALGKHQHAGA SGSEDGIAVE 660 GAGKPDGAAS KSSRSAHAAA RRARQEAAAM GHKMTVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-37 | 522 | 626 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-37 | 522 | 626 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971015.1 | 0.0 | regulatory protein viviparous-1 | ||||
Swissprot | P26307 | 0.0 | VIV1_MAIZE; Regulatory protein viviparous-1 | ||||
TrEMBL | K3XF30 | 0.0 | K3XF30_SETIT; Uncharacterized protein | ||||
STRING | Si000497m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Publications ? help Back to Top | |||
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