PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02717.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 308aa    MW: 32907.9 Da    PI: 5.505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02717.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17167214555
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   GVr ++ +gr++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zmw_sc02717.1.g00020.1.am.mk 167 GVRKRP-WGRYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 214
                                   9*****.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.074164222IPR001471AP2/ERF domain
PRINTSPR003676.0E-7165176IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21166223IPR016177DNA-binding domain
SMARTSM003802.0E-30167228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-27167223IPR001471AP2/ERF domain
PfamPF008471.5E-12167214IPR001471AP2/ERF domain
CDDcd000182.24E-14167224No hitNo description
PRINTSPR003676.0E-7188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEPQFGNSLY YGNAAYAHEG QDYSPYSFTC YDETSYSDTM AATGSYQPSS VCASQQYGGG  60
GYNHQSSSPA AWVSSSSMSS AYSHHHSYQQ QLHFGGGVDE YHGCQVEEAM GAVDMDRVSA  120
LMGAASISTT TTSWTTGHHG EAFAASSSSS AAMDESSGGG DDAPLIGVRK RPWGRYAAEI  180
RDSTRNGERV WIGTFDTPEA AALAYDQAAY SMRGPGAVLN FPVQHVQETL RELGLSGGAA  240
AGDSPVLALK RRHCIRKRSP KTKKASGEEQ TTATSRGHGK QKQSASCVLE LQDLGPEYLE  300
ELLALSYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-251672221772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249263KRRHCIRKRSPKTKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.13e-87ethylene-responsive transcription factor 1
TrEMBLC5XCK51e-98C5XCK5_SORBI; Uncharacterized protein
STRINGSb02g005840.12e-99(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249