PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02717.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 335aa    MW: 35606.1 Da    PI: 6.8417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02717.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-17194241555
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zmw_sc02717.1.g00010.1.am.mk 194 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 241
                                   9*****.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.022191249IPR001471AP2/ERF domain
PRINTSPR003673.5E-7192203IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21193250IPR016177DNA-binding domain
CDDcd000183.23E-14194251No hitNo description
PfamPF008473.2E-12194241IPR001471AP2/ERF domain
SMARTSM003808.9E-31194255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-27194250IPR001471AP2/ERF domain
PRINTSPR003673.5E-7215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEPHFGNGLY NGNAAYSRKG QPLEQGYSPY SFTSYDGTSY SYNTASAGTG VFQPSSVCAA  60
PQPYGGSGYN HQSSLAAWVS SSSSSSFTTH HHFYQQQLHF GGGIDEYYRG QVEKAMGTVD  120
MEHVNAIMGA ASISTATTSG SSASRTYAPA SCWTMERHGE TFTASHSPSA AIIHANAIDG  180
SSGGGGGDEA PLIGVRKRPW GKYAAEIRDS TRNGERVWIG TFDTPEAAAL AYDQAAYSMR  240
GPGAVLNFPV QHVQETLRDL GLSGGAAAGD SPVLELKRLH CIRRRLPKTK KAAGGQQTTV  300
TSRGHGKQKQ AASCVLELED LGPEYLDELL AQSFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-26178249172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276290KRLHCIRRRLPKTKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.16e-78ethylene-responsive transcription factor 1
TrEMBLC5XCK58e-88C5XCK5_SORBI; Uncharacterized protein
STRINGSb02g005840.11e-88(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249