PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02656.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 461aa MW: 49434 Da PI: 8.6301 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 213 | 263 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r+r +lg+f+tae+Aa a+++ + kl+ge Zmw_sc02656.1.g00050.1.sm.mk 213 LYRGVRQRH-WGKWVAEIRLPQN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 263 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.55E-31 | 212 | 272 | No hit | No description |
SMART | SM00380 | 6.1E-39 | 213 | 276 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.932 | 213 | 270 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 213 | 271 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 213 | 271 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-12 | 214 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 214 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 236 | 252 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MDAADRGGGR GRGREWKGKA VSAAGPERPR LAPVLEDAPA ATFLRPLKKP RSPDQLRRSV 60 SSLSSAPASP DSSSVSNPLS PPATSWPPTR HVFPFAYDPA PAASPDAAAG AGPRVLPLFQ 120 YSSAYQQQPL PPQQQPPVQR QQMISFGGDN QQQQFGAASP LFPPQRVAPE VQKQMLLRYW 180 SEALNLSPRG FRGGAVPPAL FQHLLRAQAP PKLYRGVRQR HWGKWVAEIR LPQNRTRLWL 240 GTFDTAEDAA MAYDREAFKL RGENARLNFP DLFLGKGRVG GSGRTSASAA ASCSSSSSSA 300 PPTPDEIRAK QAQEHHGEEP ASKNSEAKPQ IPEAEQAENS EPQQYSQVQT ADQQSGDCST 360 AMFQPPVTSS GVWGPGDEAW FSAWGPGSSV WDYDMDNAHA GLFLQSRFAS ESTGIDFVSS 420 APDVAMTPAP AAGPAMAAAS SPPPPPPSPP LPHSPTYVWK D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-20 | 209 | 270 | 1 | 63 | ATERF1 |
3gcc_A | 6e-20 | 209 | 270 | 1 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809849.1 | 0.0 | ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A2S3GRD6 | 0.0 | A0A2S3GRD6_9POAL; Uncharacterized protein | ||||
STRING | Si019997m | 1e-177 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |